Non-Coding RNA Search

OvaN-UMC-pnatal4-018-g09

Sequence:


               
               TCGCATTTTAAAAACAGCTGAATGAATTTTTTTCCTCTATGAATTTCTGTAAAAGAGTTT
GATGCAGAAACTTTAAAAAAAGTTGGCTTGCCATGTGCCAGGAGGCATCAACAATCACCA
AGCTGTTGTACAGTAACTACCTGTCCTGCCTGAATTGAAGGGTGTATGTGTCTCATGTGA
AGCAGGACATCTATCGTGAACTCTGACAGCTGTATTTTTTGACTCATTTCCATATTAAAC
TCTAATATATGCTTAAAAATCTTTTTTGGGGTCATTCATAATAATCACAAAAAGCATGAA
TCATGAAATTAGGTATAATTGGAGATTAACCTTGGTTCCAATGAAATGTGTTTTCCATTT
TTACCCTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCATTTTAAAAACAGCTGAATGAATTTTTTTCCTCTATGAATTTCTGTAAAAGAGTTT
GATGCAGAAACTTTAAAAAAAGTTGGCTTGCCATGTGCCAGGAGGCATCAACAATCACCA
AGCTGTTGTACAGTAACTACCTGTCCTGCCTGAATTGAAGGGTGTATGTGTCTCATGTGA
AGCAGGACATCTATCGTGAACTCTGACAGCTGTATTTTTTGACTCATTTCCATATTAAAC
TCTAATATATGCTTAAAAATCTTTTTTGGGGTCATTCATAATAATCACAAAAAGCATGAA
TCATGAAATTAGGTATAATTGGAGATTAACCTTGGTTCCAATGAAATGTGTTTTCCATTT
TTACCCTTCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               42-158, + strand, RNAz p=0.803422

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-158, + strand, RNAz p=0.803422

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               3-371, gnl|bosTau2|chr21 (24757964-24757605)
               

               
               3-371, gnl|canFam2|chr8 (8058283-8058673)
               

               
               3-371, gnl|dasNov1|scaffold_5857 (47625-48023)
               

               
               3-371, gnl|hg17|chr14 (24789194-24789590)
               

               
               3-371, gnl|Hg17|chr14 (24789311-24789676)
               

               
               3-371, gnl|loxAfr1|scaffold_3942 (70522-70081)
               

               
               3-371, gnl|monDom2|scaffold_8 (28061560-28061148)
               

               
               3-371, gnl|oryCun1|scaffold_85149 (6000-6407)
               

               
               3-371, gnl|panTro1|chr15 (23700695-23701092)
               

               
               3-371, gnl|rheMac2|chr7 (88152982-88153380)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-371, gnl|bosTau2|chr21 (24757964-24757605)
               

               
               3-371, gnl|canFam2|chr8 (8058283-8058673)
               

               
               3-371, gnl|dasNov1|scaffold_5857 (47625-48023)
               

               
               3-371, gnl|hg17|chr14 (24789194-24789590)
               

               
               3-371, gnl|Hg17|chr14 (24789311-24789676)
               

               
               3-371, gnl|loxAfr1|scaffold_3942 (70522-70081)
               

               
               3-371, gnl|monDom2|scaffold_8 (28061560-28061148)
               

               
               3-371, gnl|oryCun1|scaffold_85149 (6000-6407)
               

               
               3-371, gnl|panTro1|chr15 (23700695-23701092)
               

               
               3-371, gnl|rheMac2|chr7 (88152982-88153380)

	3-371, gnl\|bosTau2\|chr21 (24757964-24757605)
	3-371, gnl\|canFam2\|chr8 (8058283-8058673)
	3-371, gnl\|dasNov1\|scaffold_5857 (47625-48023)
	3-371, gnl\|hg17\|chr14 (24789194-24789590)
	3-371, gnl\|Hg17\|chr14 (24789311-24789676)
	3-371, gnl\|loxAfr1\|scaffold_3942 (70522-70081)
	3-371, gnl\|monDom2\|scaffold_8 (28061560-28061148)
	3-371, gnl\|oryCun1\|scaffold_85149 (6000-6407)
	3-371, gnl\|panTro1\|chr15 (23700695-23701092)
	3-371, gnl\|rheMac2\|chr7 (88152982-88153380)