Non-Coding RNA Search

Ovi1-UMC-pd3ov3-002-b06

Sequence:


               
               CGAATGAGCCAGCAGGGCTCAGAAGATCCCTTTGGTGTGTTAACCGATGCCTCCTCCAGA
AAGGGTCCTGCCGGGGCTTTCTTCCACCAGTCAGGAGGGCTGAAGTGCGGAGTGGATGAA
CTGCTATTGCTGAGTCCAGAAGAACAGGGCTGTTGCAAAAGTAGCTGGACTTCAGGTAAA
GGTGCGTGAGTGGACACTATGGCTCCCAAGAGTGTTAGACTTGACACACGAACATTAACA
TCTCTGTAGCAACCTGAGCCGTTGCAGTCGGATTCTTAACCTTCTGTGCCATAGAGGGAA
CTCCAGCACACTCTGATGTCAGTATTAGGAGCATTATTTGGGATTTGTCTCCTCAGGCAA
GGGAAAGAAAAAGCAAAAAACTCCGCGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAATGAGCCAGCAGGGCTCAGAAGATCCCTTTGGTGTGTTAACCGATGCCTCCTCCAGA
AAGGGTCCTGCCGGGGCTTTCTTCCACCAGTCAGGAGGGCTGAAGTGCGGAGTGGATGAA
CTGCTATTGCTGAGTCCAGAAGAACAGGGCTGTTGCAAAAGTAGCTGGACTTCAGGTAAA
GGTGCGTGAGTGGACACTATGGCTCCCAAGAGTGTTAGACTTGACACACGAACATTAACA
TCTCTGTAGCAACCTGAGCCGTTGCAGTCGGATTCTTAACCTTCTGTGCCATAGAGGGAA
CTCCAGCACACTCTGATGTCAGTATTAGGAGCATTATTTGGGATTTGTCTCCTCAGGCAA
GGGAAAGAAAAAGCAAAAAACTCCGCGCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               90-201, - strand, RNAz p=0.634985

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-201, - strand, RNAz p=0.634985

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               1-243, gnl|bosTau2|chr19 (6715308-6715066)
               

               
               1-243, gnl|canFam2|chr9 (40909699-40909993)
               

               
               1-243, gnl|danRer3|chr21 (35985253-35985540)
               

               
               1-243, gnl|dasNov1|scaffold_276 (159876-160170)
               

               
               1-243, gnl|fr1|chrUn (206432800-206432478)
               

               
               1-243, gnl|galGal2|chr19 (8221646-8221938)
               

               
               1-243, gnl|hg17|chr17 (55489188-55489482)
               

               
               1-243, gnl|Hg17|chr17 (55489306-55489548)
               

               
               1-243, gnl|loxAfr1|scaffold_108462 (1965-2259)
               

               
               1-243, gnl|mm7|chr11 (83842510-83842216)
               

               
               1-243, gnl|Mm7|chr11 (83842390-83842148)
               

               
               1-243, gnl|monDom2|scaffold_44 (6802040-6802334)
               

               
               1-243, gnl|oryCun1|scaffold_177883 (1307-1601)
               

               
               1-243, gnl|panTro1|chr19_random (41241051-41241345)
               

               
               1-243, gnl|rn3|chr10 (72010961-72010670)
               

               
               1-243, gnl|tetNig1|chr7 (3744243-3744567)
               

               
               1-243, gnl|xenTro1|scaffold_566 (561786-561499)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-243, gnl|bosTau2|chr19 (6715308-6715066)
               

               
               1-243, gnl|canFam2|chr9 (40909699-40909993)
               

               
               1-243, gnl|danRer3|chr21 (35985253-35985540)
               

               
               1-243, gnl|dasNov1|scaffold_276 (159876-160170)
               

               
               1-243, gnl|fr1|chrUn (206432800-206432478)
               

               
               1-243, gnl|galGal2|chr19 (8221646-8221938)
               

               
               1-243, gnl|hg17|chr17 (55489188-55489482)
               

               
               1-243, gnl|Hg17|chr17 (55489306-55489548)
               

               
               1-243, gnl|loxAfr1|scaffold_108462 (1965-2259)
               

               
               1-243, gnl|mm7|chr11 (83842510-83842216)
               

               
               1-243, gnl|Mm7|chr11 (83842390-83842148)
               

               
               1-243, gnl|monDom2|scaffold_44 (6802040-6802334)
               

               
               1-243, gnl|oryCun1|scaffold_177883 (1307-1601)
               

               
               1-243, gnl|panTro1|chr19_random (41241051-41241345)
               

               
               1-243, gnl|rn3|chr10 (72010961-72010670)
               

               
               1-243, gnl|tetNig1|chr7 (3744243-3744567)
               

               
               1-243, gnl|xenTro1|scaffold_566 (561786-561499)

	1-243, gnl\|bosTau2\|chr19 (6715308-6715066)
	1-243, gnl\|canFam2\|chr9 (40909699-40909993)
	1-243, gnl\|danRer3\|chr21 (35985253-35985540)
	1-243, gnl\|dasNov1\|scaffold_276 (159876-160170)
	1-243, gnl\|fr1\|chrUn (206432800-206432478)
	1-243, gnl\|galGal2\|chr19 (8221646-8221938)
	1-243, gnl\|hg17\|chr17 (55489188-55489482)
	1-243, gnl\|Hg17\|chr17 (55489306-55489548)
	1-243, gnl\|loxAfr1\|scaffold_108462 (1965-2259)
	1-243, gnl\|mm7\|chr11 (83842510-83842216)
	1-243, gnl\|Mm7\|chr11 (83842390-83842148)
	1-243, gnl\|monDom2\|scaffold_44 (6802040-6802334)
	1-243, gnl\|oryCun1\|scaffold_177883 (1307-1601)
	1-243, gnl\|panTro1\|chr19_random (41241051-41241345)
	1-243, gnl\|rn3\|chr10 (72010961-72010670)
	1-243, gnl\|tetNig1\|chr7 (3744243-3744567)
	1-243, gnl\|xenTro1\|scaffold_566 (561786-561499)