Non-Coding RNA Search

Ovi1-UMC-pd3ov3-005-h07

Sequence:


               
               AGCTGAAGACGTTATCTACAGGTTTGTAAACAAATTACATTCTTCTTTTAGGACATAAAT
AAGTTAAAATAGAGCAATTTAAGCGGACACAAGGCAACATGCCGGCAAAGAAACTTtata
tatccatgtatatatatttataatatatatatatatatatctacctatctatatGGACGT
ATACGCTCTTGGAGAAGTATACGTTGATATAGATACAAAGAAATGGATATAACCTGGTGA
GTGTCTGAAGTTCTTCGGTTCCATTGGTGCAAATTTTCTAGGCGAGTTAAGCTCTGCAAT
TTCAAAAAGTTGTTAAATTAACCTATACCACTGAGACCATGCTGCGCAAGCATTTCAAAA
ACTCCGCGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGAAGACGTTATCTACAGGTTTGTAAACAAATTACATTCTTCTTTTAGGACATAAAT
AAGTTAAAATAGAGCAATTTAAGCGGACACAAGGCAACATGCCGGCAAAGAAACTTtata
tatccatgtatatatatttataatatatatatatatatatctacctatctatatGGACGT
ATACGCTCTTGGAGAAGTATACGTTGATATAGATACAAAGAAATGGATATAACCTGGTGA
GTGTCTGAAGTTCTTCGGTTCCATTGGTGCAAATTTTCTAGGCGAGTTAAGCTCTGCAAT
TTCAAAAAGTTGTTAAATTAACCTATACCACTGAGACCATGCTGCGCAAGCATTTCAAAA
ACTCCGCGCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-276, + strand, RNAz p=0.992419

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-276, + strand, RNAz p=0.992419

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               157-258, - strand, RNAmicro p=0.998078
               

               
               152-232, + strand, RNAmicro p=0.996808

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               157-258, - strand, RNAmicro p=0.998078
               

               
               152-232, + strand, RNAmicro p=0.996808

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               161-116, ILLUMIGEN_MCQ_28157 Katze_MMBR Macaca mulatta cDNA clone IBIUW 
(gb|CN647288.1|), blast E-value=8e-32, identity=98.7% 
               

               
               161-116, UMC-pd3ov3-005-h07 Oviduct gilt D3 of estrous cycle pd3ov Sus 
(gb|CO990646.1|), blast E-value=3e-34, identity=100% 
               

               
               161-109, 1234803 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN285017.1|), 
blast E-value=1e-21, identity=96.88% 
               

               
               161-109, 1465646 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT888832.1|), 
blast E-value=0.000000000001, identity=94.34% 
               

               
               161-276, 1464110 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT899432.1|), 
blast E-value=3.9937e-43, identity=94.83% 
               

               
               161-109, LB02748.CR_B22 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE347756.1|), 
blast E-value=1e-27, identity=98.57%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               161-116, ILLUMIGEN_MCQ_28157 Katze_MMBR Macaca mulatta cDNA clone IBIUW 
(gb|CN647288.1|), blast E-value=8e-32, identity=98.7% 
               

               
               161-116, UMC-pd3ov3-005-h07 Oviduct gilt D3 of estrous cycle pd3ov Sus 
(gb|CO990646.1|), blast E-value=3e-34, identity=100% 
               

               
               161-109, 1234803 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN285017.1|), 
blast E-value=1e-21, identity=96.88% 
               

               
               161-109, 1465646 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT888832.1|), 
blast E-value=0.000000000001, identity=94.34% 
               

               
               161-276, 1464110 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT899432.1|), 
blast E-value=3.9937e-43, identity=94.83% 
               

               
               161-109, LB02748.CR_B22 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE347756.1|), 
blast E-value=1e-27, identity=98.57%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-363, gnl|bosTau2|chr22 (44539338-44539693)
               

               
               1-363, gnl|Hg17|chr3 (10344668-10345029)
               

               
               1-363, gnl|Mm7|chr6 (113908623-113908967)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-363, gnl|bosTau2|chr22 (44539338-44539693)
               

               
               1-363, gnl|Hg17|chr3 (10344668-10345029)
               

               
               1-363, gnl|Mm7|chr6 (113908623-113908967)

	157-258, - strand, RNAmicro p=0.998078
	152-232, + strand, RNAmicro p=0.996808

	161-116, ILLUMIGEN_MCQ_28157 Katze_MMBR Macaca mulatta cDNA clone IBIUW (gb\|CN647288.1\|), blast E-value=8e-32, identity=98.7%
	161-116, UMC-pd3ov3-005-h07 Oviduct gilt D3 of estrous cycle pd3ov Sus (gb\|CO990646.1\|), blast E-value=3e-34, identity=100%
	161-109, 1234803 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN285017.1\|), blast E-value=1e-21, identity=96.88%
	161-109, 1465646 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT888832.1\|), blast E-value=0.000000000001, identity=94.34%
	161-276, 1464110 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT899432.1\|), blast E-value=3.9937e-43, identity=94.83%
	161-109, LB02748.CR_B22 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE347756.1\|), blast E-value=1e-27, identity=98.57%

	1-363, gnl\|bosTau2\|chr22 (44539338-44539693)
	1-363, gnl\|Hg17\|chr3 (10344668-10345029)
	1-363, gnl\|Mm7\|chr6 (113908623-113908967)