Non-Coding RNA Search

Ovi1-UMC-pd3ov3-006-a11

Sequence:


               
               TGACACAGAAATTGAGTCACCATGTAATTGATCATCCAAATGGTACACTTGCTCAGTGTA
CTGTGCTGAATTAAAGGAAGAAAACCAAGAGTCTCCCGGTTTATCTGGGATTTATGTCAT
CCTACCTAGAAAGCATAATGTTCTTCACAAGTGGAACCTCTGACATGGTAAAATATTATA
TTTCAAATGCTAATCTTGTTCCTTTTCATAATCGAATGGTCTTCTCCTTACATGTTTCCT
TGATGAAACCTGTCTTCTAAAAAGAAAGTATTTGGAATTTCATTGTGATGCCCCTAATAA
AAAAGAAAAGCAACCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACACAGAAATTGAGTCACCATGTAATTGATCATCCAAATGGTACACTTGCTCAGTGTA
CTGTGCTGAATTAAAGGAAGAAAACCAAGAGTCTCCCGGTTTATCTGGGATTTATGTCAT
CCTACCTAGAAAGCATAATGTTCTTCACAAGTGGAACCTCTGACATGGTAAAATATTATA
TTTCAAATGCTAATCTTGTTCCTTTTCATAATCGAATGGTCTTCTCCTTACATGTTTCCT
TGATGAAACCTGTCTTCTAAAAAGAAAGTATTTGGAATTTCATTGTGATGCCCCTAATAA
AAAAGAAAAGCAACCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               79-176, - strand, RNAz p=0.549659

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-176, - strand, RNAz p=0.549659

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-253, gnl|bosTau2|chr9 (39686926-39687177)
               

               
               1-253, gnl|canFam2|chr1 (72490749-72491463)
               

               
               1-253, gnl|dasNov1|scaffold_7318 (48377-47669)
               

               
               1-253, gnl|echTel1|scaffold_290102 (1117-1811)
               

               
               1-253, gnl|hg17|chr6 (131594307-131595014)
               

               
               1-253, gnl|Hg17|chr6 (131594443-131594684)
               

               
               1-253, gnl|loxAfr1|scaffold_70942 (728-1439)
               

               
               1-253, gnl|mm7|chr10 (24963751-24963017)
               

               
               1-253, gnl|Mm7|chr10 (24963610-24963327)
               

               
               1-253, gnl|monDom2|scaffold_0 (80785209-80784636)
               

               
               1-253, gnl|oryCun1|scaffold_202636 (4791-4121)
               

               
               1-253, gnl|panTro1|chr5 (134257768-134258480)
               

               
               1-253, gnl|rheMac2|chr4 (132648447-132647751)
               

               
               1-253, gnl|rn3|chr1 (20662979-20663671)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-253, gnl|bosTau2|chr9 (39686926-39687177)
               

               
               1-253, gnl|canFam2|chr1 (72490749-72491463)
               

               
               1-253, gnl|dasNov1|scaffold_7318 (48377-47669)
               

               
               1-253, gnl|echTel1|scaffold_290102 (1117-1811)
               

               
               1-253, gnl|hg17|chr6 (131594307-131595014)
               

               
               1-253, gnl|Hg17|chr6 (131594443-131594684)
               

               
               1-253, gnl|loxAfr1|scaffold_70942 (728-1439)
               

               
               1-253, gnl|mm7|chr10 (24963751-24963017)
               

               
               1-253, gnl|Mm7|chr10 (24963610-24963327)
               

               
               1-253, gnl|monDom2|scaffold_0 (80785209-80784636)
               

               
               1-253, gnl|oryCun1|scaffold_202636 (4791-4121)
               

               
               1-253, gnl|panTro1|chr5 (134257768-134258480)
               

               
               1-253, gnl|rheMac2|chr4 (132648447-132647751)
               

               
               1-253, gnl|rn3|chr1 (20662979-20663671)

	1-253, gnl\|bosTau2\|chr9 (39686926-39687177)
	1-253, gnl\|canFam2\|chr1 (72490749-72491463)
	1-253, gnl\|dasNov1\|scaffold_7318 (48377-47669)
	1-253, gnl\|echTel1\|scaffold_290102 (1117-1811)
	1-253, gnl\|hg17\|chr6 (131594307-131595014)
	1-253, gnl\|Hg17\|chr6 (131594443-131594684)
	1-253, gnl\|loxAfr1\|scaffold_70942 (728-1439)
	1-253, gnl\|mm7\|chr10 (24963751-24963017)
	1-253, gnl\|Mm7\|chr10 (24963610-24963327)
	1-253, gnl\|monDom2\|scaffold_0 (80785209-80784636)
	1-253, gnl\|oryCun1\|scaffold_202636 (4791-4121)
	1-253, gnl\|panTro1\|chr5 (134257768-134258480)
	1-253, gnl\|rheMac2\|chr4 (132648447-132647751)
	1-253, gnl\|rn3\|chr1 (20662979-20663671)