Non-Coding RNA Search

Pig1-09H03

Sequence:


               
               ACTTTAAACAATTAATAACAAATGCTGTTTCAAACATAACCAATCTGATCATTTTTGGAG
AACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTTAGTGAAAATG
TGGAACTAGCCGCCAGTGCCTCAGTCTTCCTCTATAATGCCTTTCCATGGATTGGCATCT
TGCCTTTTGGAAAACATCAGCAGCTGTTTAGAAATGCAGCTGTGGTCTACGATTTTCTCT
CCAGGCTTATCGAAAAAGCTTCCATCAACAGAAAGCCTCAGTCACCTCAGCATTTTGTTG
ATGCTTATTTAGATGAGATGGATCAAGGTGAAAAGGACCCATCATCTACTTTCTCCAAAG
AAAACCTGATTTTCTCTGTAGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATG
TGTTACGATGGGCAATTCTTTTCATGGCCCTTTACCCAAACATTCAAGGGAGAAGACATT
GTCTTGGAGAACAGCTGGCTCGGATGGAAATGTTCCTGTTTTTTACAGCCTTGCTTCAGC
GATTTCACTTGCATTTTCCCCATGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTAAACAATTAATAACAAATGCTGTTTCAAACATAACCAATCTGATCATTTTTGGAG
AACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTTAGTGAAAATG
TGGAACTAGCCGCCAGTGCCTCAGTCTTCCTCTATAATGCCTTTCCATGGATTGGCATCT
TGCCTTTTGGAAAACATCAGCAGCTGTTTAGAAATGCAGCTGTGGTCTACGATTTTCTCT
CCAGGCTTATCGAAAAAGCTTCCATCAACAGAAAGCCTCAGTCACCTCAGCATTTTGTTG
ATGCTTATTTAGATGAGATGGATCAAGGTGAAAAGGACCCATCATCTACTTTCTCCAAAG
AAAACCTGATTTTCTCTGTAGGTGAACTCATCATTGCTGGAACTGAAACTACAACCAATG
TGTTACGATGGGCAATTCTTTTCATGGCCCTTTACCCAAACATTCAAGGGAGAAGACATT
GTCTTGGAGAACAGCTGGCTCGGATGGAAATGTTCCTGTTTTTTACAGCCTTGCTTCAGC
GATTTCACTTGCATTTTCCCCATGGACT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               69-177, - strand, RNAz p=0.848708
               

               
               218-315, + strand, RNAz p=0.965631
               

               
               241-400, - strand, RNAz p=0.820121

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-177, - strand, RNAz p=0.848708
               

               
               218-315, + strand, RNAz p=0.965631
               

               
               241-400, - strand, RNAz p=0.820121

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               223-338, + strand, RNAmicro p=0.99612

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               223-338, + strand, RNAmicro p=0.99612

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-469, gnl|bosTau2|chr15 (22499165-22498697)
               

               
               1-469, gnl|canFam2|chr21 (40746492-40747072)
               

               
               1-469, gnl|danRer3|chr15 (26819907-26819330)
               

               
               1-469, gnl|dasNov1|scaffold_2864 (37094-36516)
               

               
               1-469, gnl|echTel1|scaffold_314303 (197340-197920)
               

               
               1-469, gnl|fr1|chrUn (51556667-51557243)
               

               
               1-469, gnl|galGal2|chr5 (8045395-8045975)
               

               
               1-469, gnl|hg17|chr11 (14858250-14858830)
               

               
               1-469, gnl|Hg17|chr11 (14858725-14858257)
               

               
               1-469, gnl|loxAfr1|scaffold_22847 (12106-12686)
               

               
               1-469, gnl|mm7|chr7 (110468810-110469390)
               

               
               1-469, gnl|Mm7|chr7 (110469285-110468817)
               

               
               1-469, gnl|monDom2|scaffold_10 (57135395-57134820)
               

               
               1-469, gnl|oryCun1|scaffold_178480 (3267-2689)
               

               
               1-469, gnl|panTro1|chr9 (15053848-15054428)
               

               
               1-469, gnl|rheMac2|chr14 (57076084-57075504)
               

               
               1-469, gnl|rn3|chr1 (172731736-172732316)
               

               
               1-469, gnl|tetNig1|chr5 (6713478-6714057)
               

               
               1-469, gnl|xenTro1|scaffold_914 (154005-153430)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-469, gnl|bosTau2|chr15 (22499165-22498697)
               

               
               1-469, gnl|canFam2|chr21 (40746492-40747072)
               

               
               1-469, gnl|danRer3|chr15 (26819907-26819330)
               

               
               1-469, gnl|dasNov1|scaffold_2864 (37094-36516)
               

               
               1-469, gnl|echTel1|scaffold_314303 (197340-197920)
               

               
               1-469, gnl|fr1|chrUn (51556667-51557243)
               

               
               1-469, gnl|galGal2|chr5 (8045395-8045975)
               

               
               1-469, gnl|hg17|chr11 (14858250-14858830)
               

               
               1-469, gnl|Hg17|chr11 (14858725-14858257)
               

               
               1-469, gnl|loxAfr1|scaffold_22847 (12106-12686)
               

               
               1-469, gnl|mm7|chr7 (110468810-110469390)
               

               
               1-469, gnl|Mm7|chr7 (110469285-110468817)
               

               
               1-469, gnl|monDom2|scaffold_10 (57135395-57134820)
               

               
               1-469, gnl|oryCun1|scaffold_178480 (3267-2689)
               

               
               1-469, gnl|panTro1|chr9 (15053848-15054428)
               

               
               1-469, gnl|rheMac2|chr14 (57076084-57075504)
               

               
               1-469, gnl|rn3|chr1 (172731736-172732316)
               

               
               1-469, gnl|tetNig1|chr5 (6713478-6714057)
               

               
               1-469, gnl|xenTro1|scaffold_914 (154005-153430)

	69-177, - strand, RNAz p=0.848708
	218-315, + strand, RNAz p=0.965631
	241-400, - strand, RNAz p=0.820121

	1-469, gnl\|bosTau2\|chr15 (22499165-22498697)
	1-469, gnl\|canFam2\|chr21 (40746492-40747072)
	1-469, gnl\|danRer3\|chr15 (26819907-26819330)
	1-469, gnl\|dasNov1\|scaffold_2864 (37094-36516)
	1-469, gnl\|echTel1\|scaffold_314303 (197340-197920)
	1-469, gnl\|fr1\|chrUn (51556667-51557243)
	1-469, gnl\|galGal2\|chr5 (8045395-8045975)
	1-469, gnl\|hg17\|chr11 (14858250-14858830)
	1-469, gnl\|Hg17\|chr11 (14858725-14858257)
	1-469, gnl\|loxAfr1\|scaffold_22847 (12106-12686)
	1-469, gnl\|mm7\|chr7 (110468810-110469390)
	1-469, gnl\|Mm7\|chr7 (110469285-110468817)
	1-469, gnl\|monDom2\|scaffold_10 (57135395-57134820)
	1-469, gnl\|oryCun1\|scaffold_178480 (3267-2689)
	1-469, gnl\|panTro1\|chr9 (15053848-15054428)
	1-469, gnl\|rheMac2\|chr14 (57076084-57075504)
	1-469, gnl\|rn3\|chr1 (172731736-172732316)
	1-469, gnl\|tetNig1\|chr5 (6713478-6714057)
	1-469, gnl\|xenTro1\|scaffold_914 (154005-153430)