Non-Coding RNA Search

Pig1-100C23

Sequence:


               
               ATTTCAACTGGGTATCAGAGAGTAGACTTAGAGCCAGGTTTCCAGATTCTCTAGCCCGTT
ACATCCCTAATCCTGGATTTCCTATTGTATATCTCCAGGAGGCTCATGAGTTTCCCTTCT
TGTTAAAATTTGCTGAAATACAATAAGCCTTAGATTTTAATTCTTGATATGTTCATTTTA
TTTAATAAAATATTATTCTAGTTATCCTTCCAGAGTATCCTTGAATAAATTTCAAACAAT
AAAGTTATTCGGAAGGTTACTTGCATTTTACTGAGTAAAAATGAGTCTCAGAATGGACAT
ATTTCTATTAAATTTTAGAAAGTAAACACAGTTACTCTCTACAAGCCAAAGTTCCTCAGT
TTCTAAGTGATTTCTTTGTTAAGACATCTTGGGAAACTGGACGAAAATTTCAAGACCAGC
ATTTTGGATTAAGTCCATACCTAGTCATTTACAGGTAGACTGTAGTCCCTGGCTTTGGAA
GTTCCCAGATGGTGGACAGAGAATGGAGCCATACATTGCTCTTTCCTGTCTGTCCTCAGC
TGGGTTGAAGTTTCTTAACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCAACTGGGTATCAGAGAGTAGACTTAGAGCCAGGTTTCCAGATTCTCTAGCCCGTT
ACATCCCTAATCCTGGATTTCCTATTGTATATCTCCAGGAGGCTCATGAGTTTCCCTTCT
TGTTAAAATTTGCTGAAATACAATAAGCCTTAGATTTTAATTCTTGATATGTTCATTTTA
TTTAATAAAATATTATTCTAGTTATCCTTCCAGAGTATCCTTGAATAAATTTCAAACAAT
AAAGTTATTCGGAAGGTTACTTGCATTTTACTGAGTAAAAATGAGTCTCAGAATGGACAT
ATTTCTATTAAATTTTAGAAAGTAAACACAGTTACTCTCTACAAGCCAAAGTTCCTCAGT
TTCTAAGTGATTTCTTTGTTAAGACATCTTGGGAAACTGGACGAAAATTTCAAGACCAGC
ATTTTGGATTAAGTCCATACCTAGTCATTTACAGGTAGACTGTAGTCCCTGGCTTTGGAA
GTTCCCAGATGGTGGACAGAGAATGGAGCCATACATTGCTCTTTCCTGTCTGTCCTCAGC
TGGGTTGAAGTTTCTTAACTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               425-561, + strand, RNAz p=0.985508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-561, + strand, RNAz p=0.985508

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               51-269, gnl|bosTau2|chr11 (30044648-30044414)
               

               
               51-269, gnl|Hg17|chr2 (61100954-61100722)
               

               
               51-269, gnl|Mm7|chr11 (23661175-23661517)
               


               
               305-561, gnl|bosTau2|chr11 (30044262-30044016)
               

               
               305-561, gnl|Mm7|chr11 (23661748-23661977)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-269, gnl|bosTau2|chr11 (30044648-30044414)
               

               
               51-269, gnl|Hg17|chr2 (61100954-61100722)
               

               
               51-269, gnl|Mm7|chr11 (23661175-23661517)
               


               
               305-561, gnl|bosTau2|chr11 (30044262-30044016)
               

               
               305-561, gnl|Mm7|chr11 (23661748-23661977)

	51-269, gnl\|bosTau2\|chr11 (30044648-30044414)
	51-269, gnl\|Hg17\|chr2 (61100954-61100722)
	51-269, gnl\|Mm7\|chr11 (23661175-23661517)

	305-561, gnl\|bosTau2\|chr11 (30044262-30044016)
	305-561, gnl\|Mm7\|chr11 (23661748-23661977)