Non-Coding RNA Search

Pig1-101F16

Sequence:


               
               GCCTGCGCCCAGACCCTGCTAGCCTNGACTCCTCTGGAAATAGTTACATTTGAGATGGCT
TCTCCACAAGCAAAGATGGAGGGGGGAGGCCCAGGGAATCTGTCTCCTTTGCTCCCGCCT
TCTCCTCCCCCTCCAACTCCTATGGAGGAGGCACCTCTAGTCCAGCTATTGATGGGTAGC
CCTGAGAGAGAAGATTCATCTGAGAATTTGAGAACAAATCCATATACAGACCAGCTGAAG
TCCAAAGGCAGCCCTGGGATCCCCAATCTCTGTCAGGAAGAGGAGGCCTCTCCAGAACAG
AATGAAAAGCAAAATTCAAAGATTACTGCTCCTGAAGGTAAAGGCTCTAGCTATCCAAGC
CCAACCAGGGAGGTTGAGATTTCTGTACAAGGAGAAGGGGATGTAACCCACTCAGTACAG
GAGCCCTCAGACTGTGATGAAGACGACACTGTGACAGACATTGCCCAGCATGGCCTGGAG
ATGGTGGAGCCCTGGGAGGAGCCCCAGTGGGTGACAAGTCCCCTGCACTCCCCTACCCTG
AA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGCGCCCAGACCCTGCTAGCCTNGACTCCTCTGGAAATAGTTACATTTGAGATGGCT
TCTCCACAAGCAAAGATGGAGGGGGGAGGCCCAGGGAATCTGTCTCCTTTGCTCCCGCCT
TCTCCTCCCCCTCCAACTCCTATGGAGGAGGCACCTCTAGTCCAGCTATTGATGGGTAGC
CCTGAGAGAGAAGATTCATCTGAGAATTTGAGAACAAATCCATATACAGACCAGCTGAAG
TCCAAAGGCAGCCCTGGGATCCCCAATCTCTGTCAGGAAGAGGAGGCCTCTCCAGAACAG
AATGAAAAGCAAAATTCAAAGATTACTGCTCCTGAAGGTAAAGGCTCTAGCTATCCAAGC
CCAACCAGGGAGGTTGAGATTTCTGTACAAGGAGAAGGGGATGTAACCCACTCAGTACAG
GAGCCCTCAGACTGTGATGAAGACGACACTGTGACAGACATTGCCCAGCATGGCCTGGAG
ATGGTGGAGCCCTGGGAGGAGCCCCAGTGGGTGACAAGTCCCCTGCACTCCCCTACCCTG
AA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-199, - strand, RNAz p=0.999884
               

               
               280-399, - strand, RNAz p=0.984632

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, - strand, RNAz p=0.999884
               

               
               280-399, - strand, RNAz p=0.984632

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               47-309, - strand, RNAmicro p=0.9999

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               47-309, - strand, RNAmicro p=0.9999

Similar Transcript(s): 5 entry(ies)

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Similar Transcript(s): 5 entry(ies)

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               40-163, DA117046 BRACE3 Homo sapiens cDNA clone BRACE3036598 5', mRNA 
(dbj|DA117046.1|), blast E-value=0.00000000000001, identity=83.87% 
               

               
               40-163, DA414560 BRTHA3 Homo sapiens cDNA clone BRTHA3022976 5', mRNA 
(dbj|DA414560.1|), blast E-value=0.00000000000001, identity=83.87% 
               

               
               40-163, DKFZp686N137_r1 686 (synonym (emb|AL603530.1|), blast 
E-value=0.00000000000001, identity=83.87% 
               

               
               40-199, DKFZp469K1743_r1 469 (synonym (emb|CR787407.1|), blast E-value=7e-19, 
identity=82.5% 
               

               
               40-199, 000210BCEB002318HT BCEB Bos taurus cDNA, mRNA sequence (gb|DY158396.1|), 
blast E-value=5e-29, identity=85.62%

Similar Transcript(s): 5 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               40-163, DA117046 BRACE3 Homo sapiens cDNA clone BRACE3036598 5', mRNA 
(dbj|DA117046.1|), blast E-value=0.00000000000001, identity=83.87% 
               

               
               40-163, DA414560 BRTHA3 Homo sapiens cDNA clone BRTHA3022976 5', mRNA 
(dbj|DA414560.1|), blast E-value=0.00000000000001, identity=83.87% 
               

               
               40-163, DKFZp686N137_r1 686 (synonym (emb|AL603530.1|), blast 
E-value=0.00000000000001, identity=83.87% 
               

               
               40-199, DKFZp469K1743_r1 469 (synonym (emb|CR787407.1|), blast E-value=7e-19, 
identity=82.5% 
               

               
               40-199, 000210BCEB002318HT BCEB Bos taurus cDNA, mRNA sequence (gb|DY158396.1|), 
blast E-value=5e-29, identity=85.62%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-542, gnl|bosTau2|chr1 (41146092-41146632)
               

               
               1-542, gnl|Hg17|chr3 (120615697-120616237)
               

               
               1-542, gnl|Mm7|chr16 (38314468-38313928)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-542, gnl|bosTau2|chr1 (41146092-41146632)
               

               
               1-542, gnl|Hg17|chr3 (120615697-120616237)
               

               
               1-542, gnl|Mm7|chr16 (38314468-38313928)

	40-199, - strand, RNAz p=0.999884
	280-399, - strand, RNAz p=0.984632

	40-163, DA117046 BRACE3 Homo sapiens cDNA clone BRACE3036598 5', mRNA (dbj\|DA117046.1\|), blast E-value=0.00000000000001, identity=83.87%
	40-163, DA414560 BRTHA3 Homo sapiens cDNA clone BRTHA3022976 5', mRNA (dbj\|DA414560.1\|), blast E-value=0.00000000000001, identity=83.87%
	40-163, DKFZp686N137_r1 686 (synonym (emb\|AL603530.1\|), blast E-value=0.00000000000001, identity=83.87%
	40-199, DKFZp469K1743_r1 469 (synonym (emb\|CR787407.1\|), blast E-value=7e-19, identity=82.5%
	40-199, 000210BCEB002318HT BCEB Bos taurus cDNA, mRNA sequence (gb\|DY158396.1\|), blast E-value=5e-29, identity=85.62%

	1-542, gnl\|bosTau2\|chr1 (41146092-41146632)
	1-542, gnl\|Hg17\|chr3 (120615697-120616237)
	1-542, gnl\|Mm7\|chr16 (38314468-38313928)