Non-Coding RNA Search

Pig1-106F16

Sequence:


               
               AACTGGGCGGGGTCTGTGGGCGTCCAGCTTCCTCCAGGCTCCCAGGCCACCTCCTATTCC
GGGCACAGTGTATCGACAATCTGTAAGCTGACACAGGGCTGGAGGCCCTCCACATCCCTT
CCCCTTTAATTTATTTCCCTTCTCCTGCCTTCTGCCATGACCCCAGGTTCCCTGGTCTCT
TCCCTTGCTCAGTCCCCATCTTTAACCTCCATGTGGGGCTGCTCAGAGCCTAAAGCATGC
CTTCGCAGCCCTTCTCTGCTGAGCATGGGATGAGGTCCTCCCAAACCACCTTGCCTACTG
GGTTTGGTTCCTGGGGTGTGGGTCCCTCAGATTCAAGTCTTGAAGCATCTCAGGGCCCCA
TATCCCCCTTTTAATGGTCCCAAGAAAGGGCTCATGAGGGCCACCCTCAGGGCCTGCTGG
GCATCTGCCAAGGGAGAGGCAGAGCCTCAGGGCTGCCCAGGCAGGCCCTGGCACCCACTC
CACTGACCCTTTACTGACCCTCCCAGACCTCTCACCCCTGTTGGCCAGCTCTCCCAGAAA
ACAGCCCACTTGTCCCTTGCGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGGGCGGGGTCTGTGGGCGTCCAGCTTCCTCCAGGCTCCCAGGCCACCTCCTATTCC
GGGCACAGTGTATCGACAATCTGTAAGCTGACACAGGGCTGGAGGCCCTCCACATCCCTT
CCCCTTTAATTTATTTCCCTTCTCCTGCCTTCTGCCATGACCCCAGGTTCCCTGGTCTCT
TCCCTTGCTCAGTCCCCATCTTTAACCTCCATGTGGGGCTGCTCAGAGCCTAAAGCATGC
CTTCGCAGCCCTTCTCTGCTGAGCATGGGATGAGGTCCTCCCAAACCACCTTGCCTACTG
GGTTTGGTTCCTGGGGTGTGGGTCCCTCAGATTCAAGTCTTGAAGCATCTCAGGGCCCCA
TATCCCCCTTTTAATGGTCCCAAGAAAGGGCTCATGAGGGCCACCCTCAGGGCCTGCTGG
GCATCTGCCAAGGGAGAGGCAGAGCCTCAGGGCTGCCCAGGCAGGCCCTGGCACCCACTC
CACTGACCCTTTACTGACCCTCCCAGACCTCTCACCCCTGTTGGCCAGCTCTCCCAGAAA
ACAGCCCACTTGTCCCTTGCGCCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               77-312, - strand, RNAz p=0.998865
               

               
               350-490, - strand, RNAz p=0.987549

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-312, - strand, RNAz p=0.998865
               

               
               350-490, - strand, RNAz p=0.987549

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               392-516, - strand, RNAmicro p=0.999948
               

               
               393-517, + strand, RNAmicro p=0.999552
               

               
               169-292, + strand, RNAmicro p=0.994385

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               392-516, - strand, RNAmicro p=0.999948
               

               
               393-517, + strand, RNAmicro p=0.999552
               

               
               169-292, + strand, RNAmicro p=0.994385

Similar Transcript(s): 5 entry(ies)

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Similar Transcript(s): 5 entry(ies)

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               408-490, 186304 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE684654.1|), 
blast E-value=2e-19, identity=91.67% 
               

               
               408-490, 274338 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF651535.1|), 
blast E-value=2e-19, identity=91.67% 
               

               
               408-490, 276705 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF652980.1|), 
blast E-value=2e-19, identity=91.67% 
               

               
               408-490, 276717 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF652989.1|), 
blast E-value=2e-19, identity=91.67% 
               

               
               408-490, 469325 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI847480.1|), 
blast E-value=2e-19, identity=91.67%

Similar Transcript(s): 5 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               408-490, 186304 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE684654.1|), 
blast E-value=2e-19, identity=91.67% 
               

               
               408-490, 274338 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF651535.1|), 
blast E-value=2e-19, identity=91.67% 
               

               
               408-490, 276705 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF652980.1|), 
blast E-value=2e-19, identity=91.67% 
               

               
               408-490, 276717 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF652989.1|), 
blast E-value=2e-19, identity=91.67% 
               

               
               408-490, 469325 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI847480.1|), 
blast E-value=2e-19, identity=91.67%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-520, gnl|bosTau2|chr21 (22780112-22780645)
               

               
               1-520, gnl|Hg17|chr15 (72675404-72675917)
               

               
               1-520, gnl|Mm7|chr9 (57819969-57819454)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-520, gnl|bosTau2|chr21 (22780112-22780645)
               

               
               1-520, gnl|Hg17|chr15 (72675404-72675917)
               

               
               1-520, gnl|Mm7|chr9 (57819969-57819454)

	77-312, - strand, RNAz p=0.998865
	350-490, - strand, RNAz p=0.987549

	392-516, - strand, RNAmicro p=0.999948
	393-517, + strand, RNAmicro p=0.999552
	169-292, + strand, RNAmicro p=0.994385

	408-490, 186304 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE684654.1\|), blast E-value=2e-19, identity=91.67%
	408-490, 274338 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF651535.1\|), blast E-value=2e-19, identity=91.67%
	408-490, 276705 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF652980.1\|), blast E-value=2e-19, identity=91.67%
	408-490, 276717 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF652989.1\|), blast E-value=2e-19, identity=91.67%
	408-490, 469325 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI847480.1\|), blast E-value=2e-19, identity=91.67%

	1-520, gnl\|bosTau2\|chr21 (22780112-22780645)
	1-520, gnl\|Hg17\|chr15 (72675404-72675917)
	1-520, gnl\|Mm7\|chr9 (57819969-57819454)