Non-Coding RNA Search

Pig1-106L16

Sequence:


               
               GGTTAAGATCCTTTCAGCAGGACCGGGAAACATCTTTAAATTGTTTAAGTTTCGTAACAT
TAGGGGAAAATACAGAGAAGGATACAGAGGTAAAGTGCCTGGGTTTCCTTCATGGAATTG
TGCTTTCCTTACTGTCCTCATAACAGCAGGAAAAGCAAAGCATGCTGGATCCCACAACTA
GGGGGAAGGATTTCTTCCCAGAGGCCGTGTCCCCGACTAGCCAGAGTCTGTCCCTCCTCT
GGAGTCTCGGTTGAGTCAGGAGGTTTGCCCTCTTTCTTAGGGGAGTGCCCTGAAAGATCC
CCACAAACCGAGCCTTGAAGACAAGAGTGCAGTGGGTCCCCAGCAGACACGGGGTGAGAC
AGTCACCTGTGTTCTCCAGAGCTGCGTCCCACCAGCCTTCAGTGACTGAAGAGGGGACAT
GATGCTGTCTGTCTCGAGTGCTCAAGGAACCGCATGTCCGCCCAAGACTTGCTCTCATTG
TCCCACAAGGCCCTGGCGGACACCCCGTCCATGACCTGGGACCTGTCTGGGGTTTTGCCT
CTTGCAGTTCACCATAACTCAAGCCATTTTTTTCTTCACTCTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTAAGATCCTTTCAGCAGGACCGGGAAACATCTTTAAATTGTTTAAGTTTCGTAACAT
TAGGGGAAAATACAGAGAAGGATACAGAGGTAAAGTGCCTGGGTTTCCTTCATGGAATTG
TGCTTTCCTTACTGTCCTCATAACAGCAGGAAAAGCAAAGCATGCTGGATCCCACAACTA
GGGGGAAGGATTTCTTCCCAGAGGCCGTGTCCCCGACTAGCCAGAGTCTGTCCCTCCTCT
GGAGTCTCGGTTGAGTCAGGAGGTTTGCCCTCTTTCTTAGGGGAGTGCCCTGAAAGATCC
CCACAAACCGAGCCTTGAAGACAAGAGTGCAGTGGGTCCCCAGCAGACACGGGGTGAGAC
AGTCACCTGTGTTCTCCAGAGCTGCGTCCCACCAGCCTTCAGTGACTGAAGAGGGGACAT
GATGCTGTCTGTCTCGAGTGCTCAAGGAACCGCATGTCCGCCCAAGACTTGCTCTCATTG
TCCCACAAGGCCCTGGCGGACACCCCGTCCATGACCTGGGACCTGTCTGGGGTTTTGCCT
CTTGCAGTTCACCATAACTCAAGCCATTTTTTTCTTCACTCTGAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               268-362, - strand, RNAz p=0.90237
               

               
               436-585, - strand, RNAz p=0.719036

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-362, - strand, RNAz p=0.90237
               

               
               436-585, - strand, RNAz p=0.719036

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-585, gnl|bosTau2|chr7 (654797-654208)
               

               
               1-585, gnl|canFam2|chr11 (4787937-4787440)
               

               
               1-585, gnl|dasNov1|scaffold_6051 (58973-58387)
               

               
               1-585, gnl|echTel1|scaffold_183898 (3078-3672)
               

               
               1-585, gnl|hg17|chr5 (179272846-179273428)
               

               
               1-585, gnl|Hg17|chr5 (179273669-179273008)
               

               
               1-585, gnl|loxAfr1|scaffold_32700 (13326-12716)
               

               
               1-585, gnl|mm7|chr11 (50080935-50080371)
               

               
               1-585, gnl|Mm7|chr11 (50080152-50080783)
               

               
               1-585, gnl|panTro1|chr4 (186800684-186801263)
               

               
               1-585, gnl|rheMac2|chr6 (176600593-176601164)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-585, gnl|bosTau2|chr7 (654797-654208)
               

               
               1-585, gnl|canFam2|chr11 (4787937-4787440)
               

               
               1-585, gnl|dasNov1|scaffold_6051 (58973-58387)
               

               
               1-585, gnl|echTel1|scaffold_183898 (3078-3672)
               

               
               1-585, gnl|hg17|chr5 (179272846-179273428)
               

               
               1-585, gnl|Hg17|chr5 (179273669-179273008)
               

               
               1-585, gnl|loxAfr1|scaffold_32700 (13326-12716)
               

               
               1-585, gnl|mm7|chr11 (50080935-50080371)
               

               
               1-585, gnl|Mm7|chr11 (50080152-50080783)
               

               
               1-585, gnl|panTro1|chr4 (186800684-186801263)
               

               
               1-585, gnl|rheMac2|chr6 (176600593-176601164)

	268-362, - strand, RNAz p=0.90237
	436-585, - strand, RNAz p=0.719036

	1-585, gnl\|bosTau2\|chr7 (654797-654208)
	1-585, gnl\|canFam2\|chr11 (4787937-4787440)
	1-585, gnl\|dasNov1\|scaffold_6051 (58973-58387)
	1-585, gnl\|echTel1\|scaffold_183898 (3078-3672)
	1-585, gnl\|hg17\|chr5 (179272846-179273428)
	1-585, gnl\|Hg17\|chr5 (179273669-179273008)
	1-585, gnl\|loxAfr1\|scaffold_32700 (13326-12716)
	1-585, gnl\|mm7\|chr11 (50080935-50080371)
	1-585, gnl\|Mm7\|chr11 (50080152-50080783)
	1-585, gnl\|panTro1\|chr4 (186800684-186801263)
	1-585, gnl\|rheMac2\|chr6 (176600593-176601164)