Non-Coding RNA Search

Pig1-106M03

Sequence:


               
               AGGGATATGGAGAGAAAAGCAGACTTTTGGAATTAGGTTCTGTGAGGTGGGAAAATCTCT
TTGAAGAAAAGGAGAGATCCACCTGTCGTCAAGTGGCCAGGCAAGGGAAGGCCACCAGGA
GTGGAGCAGAAGAGCTGTGATGACCTTGAAGGGGCTGCTCAGAGGAGCTCTCAGGAGCAA
CCTGGGGTGGACTGTCTCAGCCACCTGCAGGGGCCTGCAGGGGCTGCTCTTCAGAGCTAA
TGGCAGCCGTCCCTTGATCTTCCCCTGTCCCTCTCTAAAGGAGCTGCTGACATCTAGAAT
TCTCAAAACACGGATGAGGGGTTTCTGGCTTCCACCTTTGTGCAAAAACCATCCTGTGCA
GAGGCCTCTTCCTATCTAGGAAATGCCAACCTGTTAAAAGCAGTGAGAGCTTGGTTTCAT
AGACAGTGAAGCCAACGCCCTCGGAATTTTTCCTCTAATGTCCAGCATGCTCCAGAGATT
GGACTGAAAAGAGCTCCATGGGCGATTTCCCCAGCCACCTTCCTAGTCTTCTCATTGCCT
GCCTTAGGGCGGGGGCTGGTTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGATATGGAGAGAAAAGCAGACTTTTGGAATTAGGTTCTGTGAGGTGGGAAAATCTCT
TTGAAGAAAAGGAGAGATCCACCTGTCGTCAAGTGGCCAGGCAAGGGAAGGCCACCAGGA
GTGGAGCAGAAGAGCTGTGATGACCTTGAAGGGGCTGCTCAGAGGAGCTCTCAGGAGCAA
CCTGGGGTGGACTGTCTCAGCCACCTGCAGGGGCCTGCAGGGGCTGCTCTTCAGAGCTAA
TGGCAGCCGTCCCTTGATCTTCCCCTGTCCCTCTCTAAAGGAGCTGCTGACATCTAGAAT
TCTCAAAACACGGATGAGGGGTTTCTGGCTTCCACCTTTGTGCAAAAACCATCCTGTGCA
GAGGCCTCTTCCTATCTAGGAAATGCCAACCTGTTAAAAGCAGTGAGAGCTTGGTTTCAT
AGACAGTGAAGCCAACGCCCTCGGAATTTTTCCTCTAATGTCCAGCATGCTCCAGAGATT
GGACTGAAAAGAGCTCCATGGGCGATTTCCCCAGCCACCTTCCTAGTCTTCTCATTGCCT
GCCTTAGGGCGGGGGCTGGTTTTTCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               28-145, - strand, RNAz p=0.994086
               

               
               152-293, - strand, RNAz p=0.850277
               

               
               334-452, + strand, RNAz p=0.61761

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-145, - strand, RNAz p=0.994086
               

               
               152-293, - strand, RNAz p=0.850277
               

               
               334-452, + strand, RNAz p=0.61761

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-145, gnl|bosTau2|chr5 (33599259-33599403)
               

               
               1-145, gnl|canFam2|chr10 (3325342-3325488)
               

               
               1-145, gnl|hg17|chr12 (54700142-54700286)
               

               
               1-145, gnl|Hg17|chr12 (54700323-54700178)
               

               
               1-145, gnl|mm7|chr10 (128149069-128148962)
               

               
               1-145, gnl|Mm7|chr10 (128148929-128149059)
               

               
               1-145, gnl|monDom2|scaffold_234 (410315-410470)
               

               
               1-145, gnl|oryCun1|scaffold_204377 (55287-55141)
               

               
               1-145, gnl|panTro1|chr10 (55949851-55949995)
               

               
               1-145, gnl|rheMac2|chr11 (53072994-53073138)
               

               
               1-145, gnl|rn3|chr7 (1950152-1950029)
               


               
               152-566, gnl|bosTau2|chr5 (33599490-33599913)
               

               
               152-566, gnl|Hg17|chr12 (54700079-54699734)
               

               
               152-566, gnl|Mm7|chr10 (128149113-128149483)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr5 (33599259-33599403)
               

               
               1-145, gnl|canFam2|chr10 (3325342-3325488)
               

               
               1-145, gnl|hg17|chr12 (54700142-54700286)
               

               
               1-145, gnl|Hg17|chr12 (54700323-54700178)
               

               
               1-145, gnl|mm7|chr10 (128149069-128148962)
               

               
               1-145, gnl|Mm7|chr10 (128148929-128149059)
               

               
               1-145, gnl|monDom2|scaffold_234 (410315-410470)
               

               
               1-145, gnl|oryCun1|scaffold_204377 (55287-55141)
               

               
               1-145, gnl|panTro1|chr10 (55949851-55949995)
               

               
               1-145, gnl|rheMac2|chr11 (53072994-53073138)
               

               
               1-145, gnl|rn3|chr7 (1950152-1950029)
               


               
               152-566, gnl|bosTau2|chr5 (33599490-33599913)
               

               
               152-566, gnl|Hg17|chr12 (54700079-54699734)
               

               
               152-566, gnl|Mm7|chr10 (128149113-128149483)

	28-145, - strand, RNAz p=0.994086
	152-293, - strand, RNAz p=0.850277
	334-452, + strand, RNAz p=0.61761

	1-145, gnl\|bosTau2\|chr5 (33599259-33599403)
	1-145, gnl\|canFam2\|chr10 (3325342-3325488)
	1-145, gnl\|hg17\|chr12 (54700142-54700286)
	1-145, gnl\|Hg17\|chr12 (54700323-54700178)
	1-145, gnl\|mm7\|chr10 (128149069-128148962)
	1-145, gnl\|Mm7\|chr10 (128148929-128149059)
	1-145, gnl\|monDom2\|scaffold_234 (410315-410470)
	1-145, gnl\|oryCun1\|scaffold_204377 (55287-55141)
	1-145, gnl\|panTro1\|chr10 (55949851-55949995)
	1-145, gnl\|rheMac2\|chr11 (53072994-53073138)
	1-145, gnl\|rn3\|chr7 (1950152-1950029)

	152-566, gnl\|bosTau2\|chr5 (33599490-33599913)
	152-566, gnl\|Hg17\|chr12 (54700079-54699734)
	152-566, gnl\|Mm7\|chr10 (128149113-128149483)