Non-Coding RNA Search

Pig1-107C23

Sequence:


               
               TTTTGTCTGTGTTTGGCTGGCTGGTCTGGGCATTTTTCACAAAGCTGCGTATGTCCTTAT
TCTTCTCCTGATTCCTCTTTCTTTGGAAGTTAGGAGGAAGGCAGTGGGGAACATTCACTT
ATTGTGGCTCAAATGTTACTGAGTGTGATAGGATTTGGGTGCTAGTAGTAATTTGAGGTA
GCCTGTGGCCCAGGGGTCTCAGACTCACATTGTCACAGGGGCCACACTGGTAATTTAAAA
GAAGTAAGCAGGTGAAGTGGGGAAAGTGGAGAACCAGGCAGTAGTGCTGGTCCCCTCCAT
CCAAGTGTTGCCAGGACTTTGGGCCATATTCCCAGGTCGTCTGAATCTTCTAGAGACGCA
GGGAGGTTTGTTCATCCCACTGCCCCTTGGGACTCCACTGAGTGAAACCAGTGTGTGGAA
TTCATTTCCGTTTTCTGGGAACACCAACTGATTTTTTCAGCCATTGAAAAAGCTATCGAA
CAATAACATTTCACTGCAGGTTGACGTGGGAGGGAGACAGGCGCTCCTGCTCTGTGACCA
TCAAAGAATGGCAGGTCTTGACCAAAGCAGTGTCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTCTGTGTTTGGCTGGCTGGTCTGGGCATTTTTCACAAAGCTGCGTATGTCCTTAT
TCTTCTCCTGATTCCTCTTTCTTTGGAAGTTAGGAGGAAGGCAGTGGGGAACATTCACTT
ATTGTGGCTCAAATGTTACTGAGTGTGATAGGATTTGGGTGCTAGTAGTAATTTGAGGTA
GCCTGTGGCCCAGGGGTCTCAGACTCACATTGTCACAGGGGCCACACTGGTAATTTAAAA
GAAGTAAGCAGGTGAAGTGGGGAAAGTGGAGAACCAGGCAGTAGTGCTGGTCCCCTCCAT
CCAAGTGTTGCCAGGACTTTGGGCCATATTCCCAGGTCGTCTGAATCTTCTAGAGACGCA
GGGAGGTTTGTTCATCCCACTGCCCCTTGGGACTCCACTGAGTGAAACCAGTGTGTGGAA
TTCATTTCCGTTTTCTGGGAACACCAACTGATTTTTTCAGCCATTGAAAAAGCTATCGAA
CAATAACATTTCACTGCAGGTTGACGTGGGAGGGAGACAGGCGCTCCTGCTCTGTGACCA
TCAAAGAATGGCAGGTCTTGACCAAAGCAGTGTCCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               477-577, - strand, RNAz p=0.789381

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-577, - strand, RNAz p=0.789381

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               3-359, gnl|bosTau2|chr22 (24254597-24254939)
               

               
               3-359, gnl|Hg17|chr3 (71585123-71584749)
               


               
               405-577, gnl|bosTau2|chr22 (24255029-24255199)
               

               
               405-577, gnl|canFam2|chr20 (23565770-23564975)
               

               
               405-577, gnl|dasNov1|scaffold_111 (136276-135483)
               

               
               405-577, gnl|echTel1|scaffold_317135 (63783-63011)
               

               
               405-577, gnl|hg17|chr3 (71584030-71584839)
               

               
               405-577, gnl|Hg17|chr3 (71584643-71584474)
               

               
               405-577, gnl|loxAfr1|scaffold_36040 (5882-5074)
               

               
               405-577, gnl|mm7|chr6 (99484843-99485531)
               

               
               405-577, gnl|oryCun1|scaffold_213555 (490908-491665)
               

               
               405-577, gnl|panTro1|chr2 (73525958-73526767)
               

               
               405-577, gnl|rheMac2|chr2 (64763457-64762645)
               

               
               405-577, gnl|rn3|chr4 (134487182-134487875)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-359, gnl|bosTau2|chr22 (24254597-24254939)
               

               
               3-359, gnl|Hg17|chr3 (71585123-71584749)
               


               
               405-577, gnl|bosTau2|chr22 (24255029-24255199)
               

               
               405-577, gnl|canFam2|chr20 (23565770-23564975)
               

               
               405-577, gnl|dasNov1|scaffold_111 (136276-135483)
               

               
               405-577, gnl|echTel1|scaffold_317135 (63783-63011)
               

               
               405-577, gnl|hg17|chr3 (71584030-71584839)
               

               
               405-577, gnl|Hg17|chr3 (71584643-71584474)
               

               
               405-577, gnl|loxAfr1|scaffold_36040 (5882-5074)
               

               
               405-577, gnl|mm7|chr6 (99484843-99485531)
               

               
               405-577, gnl|oryCun1|scaffold_213555 (490908-491665)
               

               
               405-577, gnl|panTro1|chr2 (73525958-73526767)
               

               
               405-577, gnl|rheMac2|chr2 (64763457-64762645)
               

               
               405-577, gnl|rn3|chr4 (134487182-134487875)

	3-359, gnl\|bosTau2\|chr22 (24254597-24254939)
	3-359, gnl\|Hg17\|chr3 (71585123-71584749)

	405-577, gnl\|bosTau2\|chr22 (24255029-24255199)
	405-577, gnl\|canFam2\|chr20 (23565770-23564975)
	405-577, gnl\|dasNov1\|scaffold_111 (136276-135483)
	405-577, gnl\|echTel1\|scaffold_317135 (63783-63011)
	405-577, gnl\|hg17\|chr3 (71584030-71584839)
	405-577, gnl\|Hg17\|chr3 (71584643-71584474)
	405-577, gnl\|loxAfr1\|scaffold_36040 (5882-5074)
	405-577, gnl\|mm7\|chr6 (99484843-99485531)
	405-577, gnl\|oryCun1\|scaffold_213555 (490908-491665)
	405-577, gnl\|panTro1\|chr2 (73525958-73526767)
	405-577, gnl\|rheMac2\|chr2 (64763457-64762645)
	405-577, gnl\|rn3\|chr4 (134487182-134487875)