Non-Coding RNA Search

Pig1-107J20

Sequence:


               
               TGAGGGCCAGGCTGGGGGACCGAGGATGCCGCTGGGCCTCTCCCTGCCCCAGGTGGAGCT
GACCGGCTTTGGGGAGGCTGACCTGGGCACCACTCCAGGGCAGCAGGCTGAGTGTGCAGC
CCCTCCAGCAGAGGGCACAGCAGGGTACAGGGTCCAGGTGCCTCAGGTGACCTTGTCTCT
ACCTGGAGCCCAGGTGGTGGGTAGCGAGCTTTTGGTGGGCGAGGGTGTCTTTAAGATGCC
TGCTGTGACAGTGCCCCAGCTTGAGCTGGATGTGGGGCTGAGCCGAGAGGCAGCCACAGG
TGAGGGTGGGCTGAGGCTGAAGATGCCTACGCTGGGGGCCAGAGCTGGGGCTGGGGGCGA
GGGGCCTGGGGACCAGCCCCCAGGGGCCGAGCGTACCTTGCATCTCTCACTGCCTGATGT
GGAGCTCTCCCCGCCCACCGTGGGTAGCCGCTCTGAGTACCAGGTGGCAGAGGGCGAGGG
CGATGCTGGACACAAGCTCAAGGTACGGCTGCCCCGGTTTGGCCTGGCACGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGGCCAGGCTGGGGGACCGAGGATGCCGCTGGGCCTCTCCCTGCCCCAGGTGGAGCT
GACCGGCTTTGGGGAGGCTGACCTGGGCACCACTCCAGGGCAGCAGGCTGAGTGTGCAGC
CCCTCCAGCAGAGGGCACAGCAGGGTACAGGGTCCAGGTGCCTCAGGTGACCTTGTCTCT
ACCTGGAGCCCAGGTGGTGGGTAGCGAGCTTTTGGTGGGCGAGGGTGTCTTTAAGATGCC
TGCTGTGACAGTGCCCCAGCTTGAGCTGGATGTGGGGCTGAGCCGAGAGGCAGCCACAGG
TGAGGGTGGGCTGAGGCTGAAGATGCCTACGCTGGGGGCCAGAGCTGGGGCTGGGGGCGA
GGGGCCTGGGGACCAGCCCCCAGGGGCCGAGCGTACCTTGCATCTCTCACTGCCTGATGT
GGAGCTCTCCCCGCCCACCGTGGGTAGCCGCTCTGAGTACCAGGTGGCAGAGGGCGAGGG
CGATGCTGGACACAAGCTCAAGGTACGGCTGCCCCGGTTTGGCCTGGCACGGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-341, + strand, RNAz p=0.978407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-341, + strand, RNAz p=0.978407

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               326-458, - strand, RNAmicro p=0.996543
               

               
               124-222, + strand, RNAmicro p=0.932887

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               326-458, - strand, RNAmicro p=0.996543
               

               
               124-222, + strand, RNAmicro p=0.932887

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020956, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020956, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-534, gnl|bosTau2|chr18 (41449397-41448861)
               

               
               1-534, gnl|Hg17|chr19 (45592691-45592152)
               

               
               1-534, gnl|Mm7|chr7 (24439368-24439886)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-534, gnl|bosTau2|chr18 (41449397-41448861)
               

               
               1-534, gnl|Hg17|chr19 (45592691-45592152)
               

               
               1-534, gnl|Mm7|chr7 (24439368-24439886)

	326-458, - strand, RNAmicro p=0.996543
	124-222, + strand, RNAmicro p=0.932887

	1-534, gnl\|bosTau2\|chr18 (41449397-41448861)
	1-534, gnl\|Hg17\|chr19 (45592691-45592152)
	1-534, gnl\|Mm7\|chr7 (24439368-24439886)