Non-Coding RNA Search

Pig1-108E10

Sequence:


               
               ACTACTCAGCCAACCCACTCCTCTAAGGCTCCAGCCAGCTGGAATTGGGTGGGGGCTTCA
TTCACAGGAGATTCTATGCAGATTTTGCCCTTGACAAGGTCAAGGCACGCGGTGACTTTT
GAAGAAAGGAGCTGTGCAAGAGAGGGGAGGCTACGTGGAGATAGCCCCAAGGAGGCCGCC
GGGACTCTTCCGGGGCATCTGTGGTTAAGATTCCTAATGATAATTGGATTCGGAGGATTG
TGCCTCAACTAGAATGAATGGTTTGGGACCCTAGGTGGTTTGCTCTTGGAGACTGTGGCG
CTTGGGGCTGGGTGTGGTCTCCATCGGGACTGGGCCCCCTGCCAGGCCCCCTGGAGATCG
ACCCCTGCCCAGGACCCTCCACGAGGAGCCTGCCCATCCCCAGGACTGCTGTGTCCAGAT
CTCCAAAGCCAACTCAGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTACTCAGCCAACCCACTCCTCTAAGGCTCCAGCCAGCTGGAATTGGGTGGGGGCTTCA
TTCACAGGAGATTCTATGCAGATTTTGCCCTTGACAAGGTCAAGGCACGCGGTGACTTTT
GAAGAAAGGAGCTGTGCAAGAGAGGGGAGGCTACGTGGAGATAGCCCCAAGGAGGCCGCC
GGGACTCTTCCGGGGCATCTGTGGTTAAGATTCCTAATGATAATTGGATTCGGAGGATTG
TGCCTCAACTAGAATGAATGGTTTGGGACCCTAGGTGGTTTGCTCTTGGAGACTGTGGCG
CTTGGGGCTGGGTGTGGTCTCCATCGGGACTGGGCCCCCTGCCAGGCCCCCTGGAGATCG
ACCCCTGCCCAGGACCCTCCACGAGGAGCCTGCCCATCCCCAGGACTGCTGTGTCCAGAT
CTCCAAAGCCAACTCAGCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               304-419, - strand, RNAz p=0.991033

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               304-419, - strand, RNAz p=0.991033

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               321-389, + strand, RNAmicro p=0.942572

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               321-389, + strand, RNAmicro p=0.942572

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-440, gnl|bosTau2|chr4 (40159470-40159895)
               

               
               1-440, gnl|Hg17|chr7 (26995680-26995231)
               

               
               1-440, gnl|Mm7|chr6 (52206754-52206298)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-440, gnl|bosTau2|chr4 (40159470-40159895)
               

               
               1-440, gnl|Hg17|chr7 (26995680-26995231)
               

               
               1-440, gnl|Mm7|chr6 (52206754-52206298)

	1-440, gnl\|bosTau2\|chr4 (40159470-40159895)
	1-440, gnl\|Hg17\|chr7 (26995680-26995231)
	1-440, gnl\|Mm7\|chr6 (52206754-52206298)