Pig1-108F18
|
CGTGGGCGGGCGCGTGGGCTTGTACTAAAAAAGCTGGGACCCTATCCCCGCATAAAAAGC
GCTAAACTGAGCTACAATGCCGTAAGCGGTGTCTTCTGCTTCTCTTCAAGGGATCTAGAT
CGTTTCTAGTGGAAAATACTAAATAATACTGAGAAGTTTTGCCCATATACACGACATGTC
GATTCTTCTAATGCCCCGTTTGCCCTAGTTAATTTTAAGCTTTATCCATCAGTGTTCCAC
GCGCGATAGAAAAACGCAGTTAACAAGATGACAGTGTTACCTAGGTATTTGGCATCAATA
TTAGCAAGAGTCTGTCATTTGACAATTATTTCCCTAGCATACCAGTCGGTAAAGAAAATG
TTTTCATTCACCCGCAAATGACTAACATTTTATTGATGTTTCAAAATGCAGTTGAATACT
ACTGCACTCTCAATTTCCGAGCCGGATTTGAGAGTTAAGCTTGAATACTGATAACATCAG
TAACTCCTGCTGCAAACGTCTTGGGTAACTGCTGGGCCTTGGGGTGTCACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CGTGGGCGGGCGCGTGGGCTTGTACTAAAAAAGCTGGGACCCTATCCCCGCATAAAAAGC
GCTAAACTGAGCTACAATGCCGTAAGCGGTGTCTTCTGCTTCTCTTCAAGGGATCTAGAT
CGTTTCTAGTGGAAAATACTAAATAATACTGAGAAGTTTTGCCCATATACACGACATGTC
GATTCTTCTAATGCCCCGTTTGCCCTAGTTAATTTTAAGCTTTATCCATCAGTGTTCCAC
GCGCGATAGAAAAACGCAGTTAACAAGATGACAGTGTTACCTAGGTATTTGGCATCAATA
TTAGCAAGAGTCTGTCATTTGACAATTATTTCCCTAGCATACCAGTCGGTAAAGAAAATG
TTTTCATTCACCCGCAAATGACTAACATTTTATTGATGTTTCAAAATGCAGTTGAATACT
ACTGCACTCTCAATTTCCGAGCCGGATTTGAGAGTTAAGCTTGAATACTGATAACATCAG
TAACTCCTGCTGCAAACGTCTTGGGTAACTGCTGGGCCTTGGGGTGTCACT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
353-444, - strand, RNAmicro p=0.984359 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
353-444, - strand, RNAmicro p=0.984359 |
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18-505, gnl|bosTau2|chr26 (17981270-17980778) |
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18-505, gnl|canFam2|chr6 (76883514-76883019) |
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18-505, gnl|echTel1|scaffold_317486 (5724-5289) |
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18-505, gnl|hg17|chr1 (72462300-72462766) |
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18-505, gnl|Hg17|chr1 (72462917-72462432) |
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18-505, gnl|loxAfr1|scaffold_20889 (71665-71195) |
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18-505, gnl|mm7|chr3 (156468598-156468134) |
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18-505, gnl|Mm7|chr3 (156467983-156468473) |
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18-505, gnl|monDom2|scaffold_40 (2611164-2610672) |
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18-505, gnl|panTro1|chr1 (71024030-71024496) |
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18-505, gnl|rheMac2|chr1 (75053957-75054419) |
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18-505, gnl|rn3|chr2 (254679173-254678706) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
18-505, gnl|bosTau2|chr26 (17981270-17980778) |
|
18-505, gnl|canFam2|chr6 (76883514-76883019) |
|
18-505, gnl|echTel1|scaffold_317486 (5724-5289) |
|
18-505, gnl|hg17|chr1 (72462300-72462766) |
|
18-505, gnl|Hg17|chr1 (72462917-72462432) |
|
18-505, gnl|loxAfr1|scaffold_20889 (71665-71195) |
|
18-505, gnl|mm7|chr3 (156468598-156468134) |
|
18-505, gnl|Mm7|chr3 (156467983-156468473) |
|
18-505, gnl|monDom2|scaffold_40 (2611164-2610672) |
|
18-505, gnl|panTro1|chr1 (71024030-71024496) |
|
18-505, gnl|rheMac2|chr1 (75053957-75054419) |
|
18-505, gnl|rn3|chr2 (254679173-254678706) |
