Non-Coding RNA Search

Pig1-108P04

Sequence:


               
               AGGTTCTCTGTCCCCCTCTCATTTCCTGAGGGAGGGGGAGATCTGTATTTACCCCCTTTC
CCTTCCCCATAGAAGCCCTTGTCCCAAGCTCCCTCCCTACCCCAAGACAGCCCCAGAACT
GGGCAAGCCTTGACCCAAGGGCAATGGGGAAGGCACTCTAGGCATTAATGAGCCTGGCTG
TGGAGTGGTCCTGGAAAGGCAGGCCAGAGTGGCTGAGAGGCTTGGGTTGCCGGGGGTACC
TATTCTCTCAGTGATGGTGATGGGGGTGCCTTTCCCAGGGGGTGGGATGGGGGGACCACA
GGGGTGGGGGTAGATAGGGAACATGCAGGAGGGTTTTCCTCCATTTCTTTTTTCTAACTG
CCTGGATTCACCATTGGATTTTGTAAATGGAAAACTGAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTTCTCTGTCCCCCTCTCATTTCCTGAGGGAGGGGGAGATCTGTATTTACCCCCTTTC
CCTTCCCCATAGAAGCCCTTGTCCCAAGCTCCCTCCCTACCCCAAGACAGCCCCAGAACT
GGGCAAGCCTTGACCCAAGGGCAATGGGGAAGGCACTCTAGGCATTAATGAGCCTGGCTG
TGGAGTGGTCCTGGAAAGGCAGGCCAGAGTGGCTGAGAGGCTTGGGTTGCCGGGGGTACC
TATTCTCTCAGTGATGGTGATGGGGGTGCCTTTCCCAGGGGGTGGGATGGGGGGACCACA
GGGGTGGGGGTAGATAGGGAACATGCAGGAGGGTTTTCCTCCATTTCTTTTTTCTAACTG
CCTGGATTCACCATTGGATTTTGTAAATGGAAAACTGAAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-402, + strand, RNAz p=0.999982

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-402, + strand, RNAz p=0.999982

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               207-304, + strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               207-304, + strand, RNAmicro p=1

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               311-222, AL521796 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens 
(emb|AL521796.3|), blast E-value=4e-26, identity=83.89% 
               

               
               311-219, 226903 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF077108.1|), 
blast E-value=9e-27, identity=83.52% 
               

               
               311-219, 530886 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM289305.1|), 
blast E-value=0.0000000000005, identity=82.22% 
               

               
               3-402, 689896 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB439901.1|), 
blast E-value=2e-33, identity=95.65% 
               

               
               311-222, ig95g12.y5 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CK822692.1|), 
blast E-value=4e-26, identity=83.89% 
               

               
               3-402, LB02726.CR_B19 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV893167.1|), 
blast E-value=2e-33, identity=95.65%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               311-222, AL521796 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens 
(emb|AL521796.3|), blast E-value=4e-26, identity=83.89% 
               

               
               311-219, 226903 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF077108.1|), 
blast E-value=9e-27, identity=83.52% 
               

               
               311-219, 530886 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM289305.1|), 
blast E-value=0.0000000000005, identity=82.22% 
               

               
               3-402, 689896 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB439901.1|), 
blast E-value=2e-33, identity=95.65% 
               

               
               311-222, ig95g12.y5 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CK822692.1|), 
blast E-value=4e-26, identity=83.89% 
               

               
               3-402, LB02726.CR_B19 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV893167.1|), 
blast E-value=2e-33, identity=95.65%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-402, gnl|bosTau2|chr25 (14036400-14036000)
               

               
               3-402, gnl|Hg17|chrX (52991349-52991758)
               

               
               3-402, gnl|Mm7|chrX (147103722-147103339)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-402, gnl|bosTau2|chr25 (14036400-14036000)
               

               
               3-402, gnl|Hg17|chrX (52991349-52991758)
               

               
               3-402, gnl|Mm7|chrX (147103722-147103339)

	311-222, AL521796 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens (emb\|AL521796.3\|), blast E-value=4e-26, identity=83.89%
	311-219, 226903 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF077108.1\|), blast E-value=9e-27, identity=83.52%
	311-219, 530886 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM289305.1\|), blast E-value=0.0000000000005, identity=82.22%
	3-402, 689896 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB439901.1\|), blast E-value=2e-33, identity=95.65%
	311-222, ig95g12.y5 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|CK822692.1\|), blast E-value=4e-26, identity=83.89%
	3-402, LB02726.CR_B19 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV893167.1\|), blast E-value=2e-33, identity=95.65%

	3-402, gnl\|bosTau2\|chr25 (14036400-14036000)
	3-402, gnl\|Hg17\|chrX (52991349-52991758)
	3-402, gnl\|Mm7\|chrX (147103722-147103339)