Non-Coding RNA Search

Pig1-110L17

Sequence:


               
               GTTGTCCCTTCCCTTCCTCCCCATCAGTGCTCCTCGGAATGTGGCTCTGGCACACAGCGT
AGAGACATCATCTGTGTGTCCAAACTGGGGACTGAGTTCAACGTGACTTCTCCTAGCAAC
TGTTCCCACTTGCCCAGGCCCCCTGCCCTGCAGCCCTGTCAGGGGCAGAACTGCCAGGAC
CGATGGTTTTCTACACCCTGGAGTCCGGTGAGTGCCTGCCTCCCTTGCCCTGTTCAGCAT
GGACTTCTCTCCCTCTGGGTCCCAGGCTAAGGCCAGCTGCACTTTACCTTGTCCCACTCC
CTAGACTTGGAGGATGGGTGGCCCCGTCCATGTGGGATTTCATAATGTGCCAGGAAGCCC
ACCCCGCCCCCACCCCCTGCCCAGGAGGACGAGGCCTGGGGTTCATGAGGAGCCTGGGAC
ACAGCAAAGGTCTGATTTGATAGCTGGGGCCTCCCCAGTGTTCTCGCTCTTGCCAGGGGG
GCGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTCCCTTCCCTTCCTCCCCATCAGTGCTCCTCGGAATGTGGCTCTGGCACACAGCGT
AGAGACATCATCTGTGTGTCCAAACTGGGGACTGAGTTCAACGTGACTTCTCCTAGCAAC
TGTTCCCACTTGCCCAGGCCCCCTGCCCTGCAGCCCTGTCAGGGGCAGAACTGCCAGGAC
CGATGGTTTTCTACACCCTGGAGTCCGGTGAGTGCCTGCCTCCCTTGCCCTGTTCAGCAT
GGACTTCTCTCCCTCTGGGTCCCAGGCTAAGGCCAGCTGCACTTTACCTTGTCCCACTCC
CTAGACTTGGAGGATGGGTGGCCCCGTCCATGTGGGATTTCATAATGTGCCAGGAAGCCC
ACCCCGCCCCCACCCCCTGCCCAGGAGGACGAGGCCTGGGGTTCATGAGGAGCCTGGGAC
ACAGCAAAGGTCTGATTTGATAGCTGGGGCCTCCCCAGTGTTCTCGCTCTTGCCAGGGGG
GCGTGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               130-245, - strand, RNAz p=0.690815
               

               
               288-403, - strand, RNAz p=0.75229

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-245, - strand, RNAz p=0.690815
               

               
               288-403, - strand, RNAz p=0.75229

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               350-457, - strand, RNAmicro p=0.993601
               

               
               313-438, + strand, RNAmicro p=0.976335

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               350-457, - strand, RNAmicro p=0.993601
               

               
               313-438, + strand, RNAmicro p=0.976335

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-245, gnl|bosTau2|chr3 (16962017-16961775)
               

               
               3-245, gnl|Hg17|chr1 (147344793-147345058)
               

               
               3-245, gnl|Mm7|chr3 (95551673-95551440)
               


               
               250-486, gnl|bosTau2|chr3 (16961742-16961514)
               

               
               250-486, gnl|Hg17|chr1 (147345099-147345337)
               

               
               250-486, gnl|Mm7|chr3 (95551412-95551178)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-245, gnl|bosTau2|chr3 (16962017-16961775)
               

               
               3-245, gnl|Hg17|chr1 (147344793-147345058)
               

               
               3-245, gnl|Mm7|chr3 (95551673-95551440)
               


               
               250-486, gnl|bosTau2|chr3 (16961742-16961514)
               

               
               250-486, gnl|Hg17|chr1 (147345099-147345337)
               

               
               250-486, gnl|Mm7|chr3 (95551412-95551178)

	130-245, - strand, RNAz p=0.690815
	288-403, - strand, RNAz p=0.75229

	350-457, - strand, RNAmicro p=0.993601
	313-438, + strand, RNAmicro p=0.976335

	3-245, gnl\|bosTau2\|chr3 (16962017-16961775)
	3-245, gnl\|Hg17\|chr1 (147344793-147345058)
	3-245, gnl\|Mm7\|chr3 (95551673-95551440)

	250-486, gnl\|bosTau2\|chr3 (16961742-16961514)
	250-486, gnl\|Hg17\|chr1 (147345099-147345337)
	250-486, gnl\|Mm7\|chr3 (95551412-95551178)