Non-Coding RNA Search

Pig1-111E04

Sequence:


               
               CCCCCAACCCTCCTCAGCAGAAGCAGCCGGCGGCGGGGGCAGGAGTCAGCCCGCTTCCGA
CTGCACCCCGCCCGCCTCCCGGGGCTCCCATTCTTTGGCCCCAGGACCCCAACCTCCTCC
CGGGGCGGTTCCCTCTGTCTGGGCGTCCGAGTGCTGCCCACCTCTCTTTCATTCCTCCCC
GCACCTCCTTACCTTCACTTTGCCCCGGTTCTCTTTCTCCTCTCAGTCCTGCCCTGTCGC
CTCCTCTGCTCACTCGGTCCCTCCTGCCTCCTTCCCTGGCTCTTTTCTGTTCGGGAAAGT
TTAGTAGTCCCCCCCCCTCCCCTCCAGTCAGGTCAGCCTGACGAGGAGTAGGGGGAGATG
TAGGAAGGCCTGAGAGTTCGAGGGGGGAAAGCTGGTTTCCCTGAACATTTCCCCCCATCC
TTTCACTTTGGGGTGGTTGGAATTTTTTTCAGTTGCATTTTTGAGGAGGTGGTAGGTGTT
TAAAAAAGGATGTGGGAATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCAACCCTCCTCAGCAGAAGCAGCCGGCGGCGGGGGCAGGAGTCAGCCCGCTTCCGA
CTGCACCCCGCCCGCCTCCCGGGGCTCCCATTCTTTGGCCCCAGGACCCCAACCTCCTCC
CGGGGCGGTTCCCTCTGTCTGGGCGTCCGAGTGCTGCCCACCTCTCTTTCATTCCTCCCC
GCACCTCCTTACCTTCACTTTGCCCCGGTTCTCTTTCTCCTCTCAGTCCTGCCCTGTCGC
CTCCTCTGCTCACTCGGTCCCTCCTGCCTCCTTCCCTGGCTCTTTTCTGTTCGGGAAAGT
TTAGTAGTCCCCCCCCCTCCCCTCCAGTCAGGTCAGCCTGACGAGGAGTAGGGGGAGATG
TAGGAAGGCCTGAGAGTTCGAGGGGGGAAAGCTGGTTTCCCTGAACATTTCCCCCCATCC
TTTCACTTTGGGGTGGTTGGAATTTTTTTCAGTTGCATTTTTGAGGAGGTGGTAGGTGTT
TAAAAAAGGATGTGGGAATGGA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.994291
               

               
               237-502, - strand, RNAz p=0.996941
               

               
               323-502, - strand, RNAz p=0.998998

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.994291
               

               
               237-502, - strand, RNAz p=0.996941
               

               
               323-502, - strand, RNAz p=0.998998

Similar Transcript(s): 12 entry(ies)

More info

Similar Transcript(s): 12 entry(ies)

Help | Less info


               
               328-387, DKFZp459J154_r1 459 (synonym (emb|CR554588.1|), blast E-value=3e-19, 
identity=96.67% 
               

               
               322-502, BP250004B20A10 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF039810.1|), blast E-value=0, identity=91.76% 
               

               
               322-305, BP250017A20C7 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF041287.1|), blast E-value=6e-27, identity=98.55% 
               

               
               322-305, BP250026B10G4 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF045178.1|), blast E-value=6e-27, identity=98.55% 
               

               
               328-502, AGENCOURT_10153133 NIH_MGC_71 Homo sapiens cDNA clone IMAGE 
(gb|BU521775.1|), blast E-value=0.000000000001, identity=97.78% 
               

               
               322-502, LB030102.CR_A09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE390201.1|), 
blast E-value=0, identity=91.21% 
               

               
               328-387, DKFZp459J154_r1 459 (synonym (emb|CR554588.1|), blast E-value=2e-19, 
identity=96.67% 
               

               
               323-502, BP250004B20A10 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF039810.1|), blast E-value=0, identity=91.71% 
               

               
               323-502, BP250017A20C7 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF041287.1|), blast E-value=0, identity=91.71% 
               

               
               323-502, BP250026B10G4 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF045178.1|), blast E-value=0, identity=91.16% 
               

               
               328-502, AGENCOURT_10153133 NIH_MGC_71 Homo sapiens cDNA clone IMAGE 
(gb|BU521775.1|), blast E-value=0.0000000000008, identity=97.78% 
               

               
               323-502, LB030102.CR_A09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE390201.1|), 
blast E-value=0, identity=91.16%

Similar Transcript(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               328-387, DKFZp459J154_r1 459 (synonym (emb|CR554588.1|), blast E-value=3e-19, 
identity=96.67% 
               

               
               322-502, BP250004B20A10 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF039810.1|), blast E-value=0, identity=91.76% 
               

               
               322-305, BP250017A20C7 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF041287.1|), blast E-value=6e-27, identity=98.55% 
               

               
               322-305, BP250026B10G4 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF045178.1|), blast E-value=6e-27, identity=98.55% 
               

               
               328-502, AGENCOURT_10153133 NIH_MGC_71 Homo sapiens cDNA clone IMAGE 
(gb|BU521775.1|), blast E-value=0.000000000001, identity=97.78% 
               

               
               322-502, LB030102.CR_A09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE390201.1|), 
blast E-value=0, identity=91.21% 
               

               
               328-387, DKFZp459J154_r1 459 (synonym (emb|CR554588.1|), blast E-value=2e-19, 
identity=96.67% 
               

               
               323-502, BP250004B20A10 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF039810.1|), blast E-value=0, identity=91.71% 
               

               
               323-502, BP250017A20C7 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF041287.1|), blast E-value=0, identity=91.71% 
               

               
               323-502, BP250026B10G4 Soares normalized bovine placenta Bos taurus cDNA 
(gb|BF045178.1|), blast E-value=0, identity=91.16% 
               

               
               328-502, AGENCOURT_10153133 NIH_MGC_71 Homo sapiens cDNA clone IMAGE 
(gb|BU521775.1|), blast E-value=0.0000000000008, identity=97.78% 
               

               
               323-502, LB030102.CR_A09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE390201.1|), 
blast E-value=0, identity=91.16%

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-502, gnl|bosTau2|chr19 (13078559-13079054)
               

               
               1-502, gnl|canFam2|chr9 (45724692-45725035)
               

               
               1-502, gnl|dasNov1|scaffold_15678 (11712-11358)
               

               
               1-502, gnl|hg17|chr17 (23393101-23393436)
               

               
               1-502, gnl|Hg17|chr17 (23393108-23393604)
               

               
               1-502, gnl|loxAfr1|scaffold_4235 (62998-62654)
               

               
               1-502, gnl|mm7|chr11 (78778812-78778465)
               

               
               1-502, gnl|Mm7|chr11 (78778803-78778293)
               

               
               1-502, gnl|monDom2|scaffold_44 (13964223-13964663)
               

               
               1-502, gnl|oryCun1|scaffold_210809 (112536-112198)
               

               
               1-502, gnl|panTro1|chr19 (26723948-26724283)
               

               
               1-502, gnl|rn3|chr10 (64818351-64818000)
               

               
               1-502, gnl|xenTro1|scaffold_456 (975670-976000)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-502, gnl|bosTau2|chr19 (13078559-13079054)
               

               
               1-502, gnl|canFam2|chr9 (45724692-45725035)
               

               
               1-502, gnl|dasNov1|scaffold_15678 (11712-11358)
               

               
               1-502, gnl|hg17|chr17 (23393101-23393436)
               

               
               1-502, gnl|Hg17|chr17 (23393108-23393604)
               

               
               1-502, gnl|loxAfr1|scaffold_4235 (62998-62654)
               

               
               1-502, gnl|mm7|chr11 (78778812-78778465)
               

               
               1-502, gnl|Mm7|chr11 (78778803-78778293)
               

               
               1-502, gnl|monDom2|scaffold_44 (13964223-13964663)
               

               
               1-502, gnl|oryCun1|scaffold_210809 (112536-112198)
               

               
               1-502, gnl|panTro1|chr19 (26723948-26724283)
               

               
               1-502, gnl|rn3|chr10 (64818351-64818000)
               

               
               1-502, gnl|xenTro1|scaffold_456 (975670-976000)

	1-119, - strand, RNAz p=0.994291
	237-502, - strand, RNAz p=0.996941
	323-502, - strand, RNAz p=0.998998

	328-387, DKFZp459J154_r1 459 (synonym (emb\|CR554588.1\|), blast E-value=3e-19, identity=96.67%
	322-502, BP250004B20A10 Soares normalized bovine placenta Bos taurus cDNA (gb\|BF039810.1\|), blast E-value=0, identity=91.76%
	322-305, BP250017A20C7 Soares normalized bovine placenta Bos taurus cDNA (gb\|BF041287.1\|), blast E-value=6e-27, identity=98.55%
	322-305, BP250026B10G4 Soares normalized bovine placenta Bos taurus cDNA (gb\|BF045178.1\|), blast E-value=6e-27, identity=98.55%
	328-502, AGENCOURT_10153133 NIH_MGC_71 Homo sapiens cDNA clone IMAGE (gb\|BU521775.1\|), blast E-value=0.000000000001, identity=97.78%
	322-502, LB030102.CR_A09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE390201.1\|), blast E-value=0, identity=91.21%
	328-387, DKFZp459J154_r1 459 (synonym (emb\|CR554588.1\|), blast E-value=2e-19, identity=96.67%
	323-502, BP250004B20A10 Soares normalized bovine placenta Bos taurus cDNA (gb\|BF039810.1\|), blast E-value=0, identity=91.71%
	323-502, BP250017A20C7 Soares normalized bovine placenta Bos taurus cDNA (gb\|BF041287.1\|), blast E-value=0, identity=91.71%
	323-502, BP250026B10G4 Soares normalized bovine placenta Bos taurus cDNA (gb\|BF045178.1\|), blast E-value=0, identity=91.16%
	328-502, AGENCOURT_10153133 NIH_MGC_71 Homo sapiens cDNA clone IMAGE (gb\|BU521775.1\|), blast E-value=0.0000000000008, identity=97.78%
	323-502, LB030102.CR_A09 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE390201.1\|), blast E-value=0, identity=91.16%

	1-502, gnl\|bosTau2\|chr19 (13078559-13079054)
	1-502, gnl\|canFam2\|chr9 (45724692-45725035)
	1-502, gnl\|dasNov1\|scaffold_15678 (11712-11358)
	1-502, gnl\|hg17\|chr17 (23393101-23393436)
	1-502, gnl\|Hg17\|chr17 (23393108-23393604)
	1-502, gnl\|loxAfr1\|scaffold_4235 (62998-62654)
	1-502, gnl\|mm7\|chr11 (78778812-78778465)
	1-502, gnl\|Mm7\|chr11 (78778803-78778293)
	1-502, gnl\|monDom2\|scaffold_44 (13964223-13964663)
	1-502, gnl\|oryCun1\|scaffold_210809 (112536-112198)
	1-502, gnl\|panTro1\|chr19 (26723948-26724283)
	1-502, gnl\|rn3\|chr10 (64818351-64818000)
	1-502, gnl\|xenTro1\|scaffold_456 (975670-976000)