Non-Coding RNA Search

Pig1-112D18

Sequence:


               
               AGAAGAAAGACACTTGCTCATCCAGAGAAGCACCTTTATCTGAGACAGCTCTGCCGCCAA
GGGGTCCTTGGAGCCTGGAACACCATCCCACACTCCTTTAACTGAGGCCTCTGGGCCTCA
GAGAGGGCCAGGAGTTAGAAAGGAGGCCAGACAGTCCTTGCTGTCCTCCCTGGGGAGAGA
GGAATTTCCCCACCGGATCCCAGGCCCAAAAGGAGCTGGGCCAGGAATATAGCGGGGTCC
TGGCCCCTGAGGCAACAGCGGCCATGTCACAGCCAGGCCAGGGCGTGATGGTGCCGGTGA
ACGGGCTGGGCTTCCCACCGCAGAATGTGGCCCGGGTGGTGGTGTGGGAGTGGCTGAATG
AGCACAGCCGCTGGCGGCCCTACACGGCCACTGTGTGCCACCACATCGAGAACGTGCTTA
AGGAGGATGCCCGGGGTTCCGTGGTCCTGGGGCAGGTGGACGCCCAGTTGGTGCCCTACA
TCATCGACTTGCAGTCCATGCACCAGTTTCGCCAGGACACAGGTACCATGCGACCCGTGC
GGCGCAATTTCTACGACCCGTCGTCGGCGCCTGGCAAGGGCATCGTGTGGGAGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGAAAGACACTTGCTCATCCAGAGAAGCACCTTTATCTGAGACAGCTCTGCCGCCAA
GGGGTCCTTGGAGCCTGGAACACCATCCCACACTCCTTTAACTGAGGCCTCTGGGCCTCA
GAGAGGGCCAGGAGTTAGAAAGGAGGCCAGACAGTCCTTGCTGTCCTCCCTGGGGAGAGA
GGAATTTCCCCACCGGATCCCAGGCCCAAAAGGAGCTGGGCCAGGAATATAGCGGGGTCC
TGGCCCCTGAGGCAACAGCGGCCATGTCACAGCCAGGCCAGGGCGTGATGGTGCCGGTGA
ACGGGCTGGGCTTCCCACCGCAGAATGTGGCCCGGGTGGTGGTGTGGGAGTGGCTGAATG
AGCACAGCCGCTGGCGGCCCTACACGGCCACTGTGTGCCACCACATCGAGAACGTGCTTA
AGGAGGATGCCCGGGGTTCCGTGGTCCTGGGGCAGGTGGACGCCCAGTTGGTGCCCTACA
TCATCGACTTGCAGTCCATGCACCAGTTTCGCCAGGACACAGGTACCATGCGACCCGTGC
GGCGCAATTTCTACGACCCGTCGTCGGCGCCTGGCAAGGGCATCGTGTGGGAGTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62659121|ref|XP_344120.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62659121|ref|XP_344120.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-418, - strand, RNAz p=0.999355

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-418, - strand, RNAz p=0.999355

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-524, gnl|bosTau2|chr17 (37943824-37943294)
               

               
               3-524, gnl|Hg17|chr12 (111958460-111958978)
               

               
               3-524, gnl|Mm7|chr5 (119944555-119944039)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-524, gnl|bosTau2|chr17 (37943824-37943294)
               

               
               3-524, gnl|Hg17|chr12 (111958460-111958978)
               

               
               3-524, gnl|Mm7|chr5 (119944555-119944039)

	3-524, gnl\|bosTau2\|chr17 (37943824-37943294)
	3-524, gnl\|Hg17\|chr12 (111958460-111958978)
	3-524, gnl\|Mm7\|chr5 (119944555-119944039)