Non-Coding RNA Search

Pig1-112E20

Sequence:


               
               AGGTTCCTCCCATAGGATTCATTCTCAGAGCATCGCTCAGGTGGACCTCGGTCCTCCGGC
GCCTCCGCTGTTGCCCGCTCCCCGGACCACAGCCCCCACCTCCACGAACGTCCGGAACCT
TCCTGCGGTCTTCTCCACCCGGAGCTCCGTCCCTTCCCTGACGCCTTCCGCCCAGCCCTC
CAGAAGCGTCCATCACAGCAGCCTCAAGCTCTTCTCTGCAGCAGGACCACCCGCATCCAA
ATTCTGGACCCTGGGGGAGAAGCCCCACATCGTCACCAAGTCTCCTCCCTCTGTGACTGT
CACCGCGGAGACAGACGTTGTGTTTCCTTGTGAGGCAACAGGCCAACCCCAGCCTTTTGT
GACCTGGACAAAGGTGTCCACAGGTGCTCTCATGACCCCAAACACCAGAGTGCAGCGGTT
TGAAGTCCTGAAGAATGGCACTTTCGTCATCCGAAACGTGCAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTTCCTCCCATAGGATTCATTCTCAGAGCATCGCTCAGGTGGACCTCGGTCCTCCGGC
GCCTCCGCTGTTGCCCGCTCCCCGGACCACAGCCCCCACCTCCACGAACGTCCGGAACCT
TCCTGCGGTCTTCTCCACCCGGAGCTCCGTCCCTTCCCTGACGCCTTCCGCCCAGCCCTC
CAGAAGCGTCCATCACAGCAGCCTCAAGCTCTTCTCTGCAGCAGGACCACCCGCATCCAA
ATTCTGGACCCTGGGGGAGAAGCCCCACATCGTCACCAAGTCTCCTCCCTCTGTGACTGT
CACCGCGGAGACAGACGTTGTGTTTCCTTGTGAGGCAACAGGCCAACCCCAGCCTTTTGT
GACCTGGACAAAGGTGTCCACAGGTGCTCTCATGACCCCAAACACCAGAGTGCAGCGGTT
TGAAGTCCTGAAGAATGGCACTTTCGTCATCCGAAACGTGCAGGTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               40-159, - strand, RNAz p=0.649594
               

               
               200-385, - strand, RNAz p=0.866459
               

               
               253-370, - strand, RNAz p=0.508978

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.649594
               

               
               200-385, - strand, RNAz p=0.866459
               

               
               253-370, - strand, RNAz p=0.508978

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-385, gnl|bosTau2|chrX (48307046-48307430)
               

               
               1-385, gnl|canFam2|chrX (1716255-1715944)
               

               
               1-385, gnl|dasNov1|scaffold_112263 (4352-4044)
               

               
               1-385, gnl|galGal2|chr1 (121352297-121352635)
               

               
               1-385, gnl|Hg17|chrX (3231789-3231408)
               

               
               1-385, gnl|hg17|chrY (12532054-12532362)
               

               
               1-385, gnl|loxAfr1|scaffold_19751 (17810-17499)
               

               
               1-385, gnl|monDom2|scaffold_11 (962186-962503)
               

               
               1-385, gnl|panTro1|chrY (12998148-12998456)
               

               
               1-385, gnl|rheMac2|chrX (960293-959985)
               

               
               1-385, gnl|xenTro1|scaffold_839 (277525-277851)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-385, gnl|bosTau2|chrX (48307046-48307430)
               

               
               1-385, gnl|canFam2|chrX (1716255-1715944)
               

               
               1-385, gnl|dasNov1|scaffold_112263 (4352-4044)
               

               
               1-385, gnl|galGal2|chr1 (121352297-121352635)
               

               
               1-385, gnl|Hg17|chrX (3231789-3231408)
               

               
               1-385, gnl|hg17|chrY (12532054-12532362)
               

               
               1-385, gnl|loxAfr1|scaffold_19751 (17810-17499)
               

               
               1-385, gnl|monDom2|scaffold_11 (962186-962503)
               

               
               1-385, gnl|panTro1|chrY (12998148-12998456)
               

               
               1-385, gnl|rheMac2|chrX (960293-959985)
               

               
               1-385, gnl|xenTro1|scaffold_839 (277525-277851)

	40-159, - strand, RNAz p=0.649594
	200-385, - strand, RNAz p=0.866459
	253-370, - strand, RNAz p=0.508978

	1-385, gnl\|bosTau2\|chrX (48307046-48307430)
	1-385, gnl\|canFam2\|chrX (1716255-1715944)
	1-385, gnl\|dasNov1\|scaffold_112263 (4352-4044)
	1-385, gnl\|galGal2\|chr1 (121352297-121352635)
	1-385, gnl\|Hg17\|chrX (3231789-3231408)
	1-385, gnl\|hg17\|chrY (12532054-12532362)
	1-385, gnl\|loxAfr1\|scaffold_19751 (17810-17499)
	1-385, gnl\|monDom2\|scaffold_11 (962186-962503)
	1-385, gnl\|panTro1\|chrY (12998148-12998456)
	1-385, gnl\|rheMac2\|chrX (960293-959985)
	1-385, gnl\|xenTro1\|scaffold_839 (277525-277851)