Non-Coding RNA Search

Pig1-112F24

Sequence:


               
               GACGAAGCCGAGGAGGCCGGGGTGGTCCNTGAGAAGCACCCAGTCCGCGCTCCAAGCCGG
CCTGGCCGAAGACGCCTGGGCGGCCCCGATCGCCACCCAGATCTACAAGAAGCACGTGGA
CCCCAGGCCTGGGCCGTGCCCCCCGGAGCTGGGCCTGGCCCTGGGTCAGCTGGCCTGCTG
CTGCCTGCACCGCCGGGCCAAGCGGAGGCCCCCCATGACCCAGGTAGTCCTGGGCGGTGG
GGGGGGACGGGAAGCAGCCAGCCACCTGCGGGGGGCCAGCGGCCTGCCCTGTAGGGAGCC
AGAGCCAGCCCCTGCCAGCCCTCTTGCTGCAGACGTCTCCAAAGGGGCCCTCTGCCTGGA
GAGTCCCACCAGCCCGCCGTGCAGGGCGAGGCAAAAGGCTTTCCCTGCGCCCTCTCCTGG
GTGGACCGCGCCACTGCACCTGCCTTTTTTGTGTCCCCTCCCCAGCCCCCACCTCTTCCC
CGTTCCCAGGCCTTAGCTTTGGTGGCCGTGGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGAAGCCGAGGAGGCCGGGGTGGTCCNTGAGAAGCACCCAGTCCGCGCTCCAAGCCGG
CCTGGCCGAAGACGCCTGGGCGGCCCCGATCGCCACCCAGATCTACAAGAAGCACGTGGA
CCCCAGGCCTGGGCCGTGCCCCCCGGAGCTGGGCCTGGCCCTGGGTCAGCTGGCCTGCTG
CTGCCTGCACCGCCGGGCCAAGCGGAGGCCCCCCATGACCCAGGTAGTCCTGGGCGGTGG
GGGGGGACGGGAAGCAGCCAGCCACCTGCGGGGGGCCAGCGGCCTGCCCTGTAGGGAGCC
AGAGCCAGCCCCTGCCAGCCCTCTTGCTGCAGACGTCTCCAAAGGGGCCCTCTGCCTGGA
GAGTCCCACCAGCCCGCCGTGCAGGGCGAGGCAAAAGGCTTTCCCTGCGCCCTCTCCTGG
GTGGACCGCGCCACTGCACCTGCCTTTTTTGTGTCCCCTCCCCAGCCCCCACCTCTTCCC
CGTTCCCAGGCCTTAGCTTTGGTGGCCGTGGCTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|21952768|dbj|BAC06198.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21952768|dbj|BAC06198.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               21-174, + strand, RNAz p=0.933193
               

               
               41-200, - strand, RNAz p=0.716125

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-174, + strand, RNAz p=0.933193
               

               
               41-200, - strand, RNAz p=0.716125

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-243, gnl|bosTau2|chr7 (6396242-6396001)
               

               
               1-243, gnl|canFam2|chrX (124900248-124900565)
               

               
               1-243, gnl|echTel1|scaffold_199763 (6044-6303)
               

               
               1-243, gnl|hg17|chrX (152800308-152800600)
               

               
               1-243, gnl|Hg17|chrX (152800561-152800314)
               

               
               1-243, gnl|loxAfr1|scaffold_39600 (3717-3999)
               

               
               1-243, gnl|mm7|chrX (69404736-69405044)
               

               
               1-243, gnl|Mm7|chrX (69405000-69404747)
               

               
               1-243, gnl|monDom2|scaffold_216 (134165-134441)
               

               
               1-243, gnl|panTro1|chrX (158116723-158117015)
               

               
               1-243, gnl|rheMac2|chrX (152139907-152140187)
               

               
               1-243, gnl|rn3|chrX (160037662-160037965)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-243, gnl|bosTau2|chr7 (6396242-6396001)
               

               
               1-243, gnl|canFam2|chrX (124900248-124900565)
               

               
               1-243, gnl|echTel1|scaffold_199763 (6044-6303)
               

               
               1-243, gnl|hg17|chrX (152800308-152800600)
               

               
               1-243, gnl|Hg17|chrX (152800561-152800314)
               

               
               1-243, gnl|loxAfr1|scaffold_39600 (3717-3999)
               

               
               1-243, gnl|mm7|chrX (69404736-69405044)
               

               
               1-243, gnl|Mm7|chrX (69405000-69404747)
               

               
               1-243, gnl|monDom2|scaffold_216 (134165-134441)
               

               
               1-243, gnl|panTro1|chrX (158116723-158117015)
               

               
               1-243, gnl|rheMac2|chrX (152139907-152140187)
               

               
               1-243, gnl|rn3|chrX (160037662-160037965)

	21-174, + strand, RNAz p=0.933193
	41-200, - strand, RNAz p=0.716125

	1-243, gnl\|bosTau2\|chr7 (6396242-6396001)
	1-243, gnl\|canFam2\|chrX (124900248-124900565)
	1-243, gnl\|echTel1\|scaffold_199763 (6044-6303)
	1-243, gnl\|hg17\|chrX (152800308-152800600)
	1-243, gnl\|Hg17\|chrX (152800561-152800314)
	1-243, gnl\|loxAfr1\|scaffold_39600 (3717-3999)
	1-243, gnl\|mm7\|chrX (69404736-69405044)
	1-243, gnl\|Mm7\|chrX (69405000-69404747)
	1-243, gnl\|monDom2\|scaffold_216 (134165-134441)
	1-243, gnl\|panTro1\|chrX (158116723-158117015)
	1-243, gnl\|rheMac2\|chrX (152139907-152140187)
	1-243, gnl\|rn3\|chrX (160037662-160037965)