Non-Coding RNA Search

Pig1-112I06

Sequence:


               
               GGAAGTTCTCCTTCGAAGCAGACGTGGAGGACCCCTTGGCCGGACTCCTCTCCGACGACG
AGGGAGGAGTTGCCAAGAAGCCGTCTGGGACAGAGAGTAAAACAGCTTCTGAAAAGAACC
CAGTCCCGGTCAGAGACCAAGGGCCCGCTATTCCTCTAACTCCTGGGGACACCCCAGTCC
GGAAGAAAGGAGACTCGCTGTTTGACAATGGGGACGACATCGTGGCCGCCCTGGGCTTTG
GAGACAGCCCCAAGGCGGAGAGGAGGCGGACGGGAGACCAGGAAGGGCCCCTCCCTGCTC
GCTCCAAGCTGGATGAGCTGCTGGGTCGGGGCACGGCCGCCAGACTCCTGGCCCGCCCGG
GCACTGGGGAGCACAGGGAGTTCCAGCTGGACCCGAAGTACCAGAGGCCACAGGACAGAG
AAGATGCCTGGGGAGACGAGGACTTCACCTTTGGAGCCTACCAGCCCACCTTGTGCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGTTCTCCTTCGAAGCAGACGTGGAGGACCCCTTGGCCGGACTCCTCTCCGACGACG
AGGGAGGAGTTGCCAAGAAGCCGTCTGGGACAGAGAGTAAAACAGCTTCTGAAAAGAACC
CAGTCCCGGTCAGAGACCAAGGGCCCGCTATTCCTCTAACTCCTGGGGACACCCCAGTCC
GGAAGAAAGGAGACTCGCTGTTTGACAATGGGGACGACATCGTGGCCGCCCTGGGCTTTG
GAGACAGCCCCAAGGCGGAGAGGAGGCGGACGGGAGACCAGGAAGGGCCCCTCCCTGCTC
GCTCCAAGCTGGATGAGCTGCTGGGTCGGGGCACGGCCGCCAGACTCCTGGCCCGCCCGG
GCACTGGGGAGCACAGGGAGTTCCAGCTGGACCCGAAGTACCAGAGGCCACAGGACAGAG
AAGATGCCTGGGGAGACGAGGACTTCACCTTTGGAGCCTACCAGCCCACCTTGTGCTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61814955|ref|XP_591777.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61814955|ref|XP_591777.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               171-292, + strand, RNAz p=0.967141
               

               
               190-292, + strand, RNAz p=0.936779

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-292, + strand, RNAz p=0.967141
               

               
               190-292, + strand, RNAz p=0.936779

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               140-292, gnl|bosTau2|chr19 (49629718-49629870)
               

               
               140-292, gnl|canFam2|chr9 (7690329-7690193)
               

               
               140-292, gnl|danRer3|chrUn (31754630-31754760)
               

               
               140-292, gnl|dasNov1|scaffold_71392 (4149-4268)
               

               
               140-292, gnl|echTel1|scaffold_293976 (197-73)
               

               
               140-292, gnl|galGal2|chr18 (4417498-4417343)
               

               
               140-292, gnl|hg17|chr17 (71433948-71434073)
               

               
               140-292, gnl|Hg17|chr17 (71434104-71433952)
               

               
               140-292, gnl|mm7|chr11 (116264009-116264142)
               

               
               140-292, gnl|Mm7|chr11 (116264173-116264009)
               

               
               140-292, gnl|monDom2|scaffold_18 (33747004-33747157)
               

               
               140-292, gnl|oryCun1|scaffold_161118 (1133-1270)
               

               
               140-292, gnl|panTro1|chr19 (74791839-74791964)
               

               
               140-292, gnl|rheMac2|chr16 (71246834-71246958)
               

               
               140-292, gnl|rn3|chr10 (106276451-106276585)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-292, gnl|bosTau2|chr19 (49629718-49629870)
               

               
               140-292, gnl|canFam2|chr9 (7690329-7690193)
               

               
               140-292, gnl|danRer3|chrUn (31754630-31754760)
               

               
               140-292, gnl|dasNov1|scaffold_71392 (4149-4268)
               

               
               140-292, gnl|echTel1|scaffold_293976 (197-73)
               

               
               140-292, gnl|galGal2|chr18 (4417498-4417343)
               

               
               140-292, gnl|hg17|chr17 (71433948-71434073)
               

               
               140-292, gnl|Hg17|chr17 (71434104-71433952)
               

               
               140-292, gnl|mm7|chr11 (116264009-116264142)
               

               
               140-292, gnl|Mm7|chr11 (116264173-116264009)
               

               
               140-292, gnl|monDom2|scaffold_18 (33747004-33747157)
               

               
               140-292, gnl|oryCun1|scaffold_161118 (1133-1270)
               

               
               140-292, gnl|panTro1|chr19 (74791839-74791964)
               

               
               140-292, gnl|rheMac2|chr16 (71246834-71246958)
               

               
               140-292, gnl|rn3|chr10 (106276451-106276585)

	171-292, + strand, RNAz p=0.967141
	190-292, + strand, RNAz p=0.936779

	140-292, gnl\|bosTau2\|chr19 (49629718-49629870)
	140-292, gnl\|canFam2\|chr9 (7690329-7690193)
	140-292, gnl\|danRer3\|chrUn (31754630-31754760)
	140-292, gnl\|dasNov1\|scaffold_71392 (4149-4268)
	140-292, gnl\|echTel1\|scaffold_293976 (197-73)
	140-292, gnl\|galGal2\|chr18 (4417498-4417343)
	140-292, gnl\|hg17\|chr17 (71433948-71434073)
	140-292, gnl\|Hg17\|chr17 (71434104-71433952)
	140-292, gnl\|mm7\|chr11 (116264009-116264142)
	140-292, gnl\|Mm7\|chr11 (116264173-116264009)
	140-292, gnl\|monDom2\|scaffold_18 (33747004-33747157)
	140-292, gnl\|oryCun1\|scaffold_161118 (1133-1270)
	140-292, gnl\|panTro1\|chr19 (74791839-74791964)
	140-292, gnl\|rheMac2\|chr16 (71246834-71246958)
	140-292, gnl\|rn3\|chr10 (106276451-106276585)