Non-Coding RNA Search

Pig1-112K03

Sequence:


               
               TCCGCCACTTCAACGAGCTGGAGCACGAGCTACAGTCCCGCCTCAACCGAGGCTACAAGC
CTGCATCCAAGTACATGAATTGCTTCTTGTCCCCGCTGCTGACACTGCTGGCCAAGAACT
GCGCCTTCTTCGCTGGCTCCATCCTGGCCGTGCTCATCGCCCTCACCATCTACGATGAAG
ATGTGTTGGCCGTGGAACACGTCCTCACCACCGTCACGCTCCTGGGGGTCACCGTGACCG
TGTGCAGGTCCTTTATCCCGGACCAGCACATGGTGTTCTGCCCTGAGCAGCTGCTCCGAG
TGATCCTCGCTCACATCCACTACATGCCTGACCACTGGCAGGGTAATGCCCACCGCTCGC
AGACCCGGGACGAGTTTGCCCAGCTCTTCCAGTACAAGGCAGTGTTCATCTTGGAGGAGT
TACTGAGCCCCATCGTTACCCCCCTCATCCTCATCTTCTGCCTGCGTCCTCGGGCCCTGG
AGATCATAGACTTCTTCCGCAATTTCACCGTGGAGGTCGTTGGTGTTGGCGATACCTGCT
CCTTTGCGCAGATGGATGTTCGCCAGCATGGGCATCCCCAGTGGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGCCACTTCAACGAGCTGGAGCACGAGCTACAGTCCCGCCTCAACCGAGGCTACAAGC
CTGCATCCAAGTACATGAATTGCTTCTTGTCCCCGCTGCTGACACTGCTGGCCAAGAACT
GCGCCTTCTTCGCTGGCTCCATCCTGGCCGTGCTCATCGCCCTCACCATCTACGATGAAG
ATGTGTTGGCCGTGGAACACGTCCTCACCACCGTCACGCTCCTGGGGGTCACCGTGACCG
TGTGCAGGTCCTTTATCCCGGACCAGCACATGGTGTTCTGCCCTGAGCAGCTGCTCCGAG
TGATCCTCGCTCACATCCACTACATGCCTGACCACTGGCAGGGTAATGCCCACCGCTCGC
AGACCCGGGACGAGTTTGCCCAGCTCTTCCAGTACAAGGCAGTGTTCATCTTGGAGGAGT
TACTGAGCCCCATCGTTACCCCCCTCATCCTCATCTTCTGCCTGCGTCCTCGGGCCCTGG
AGATCATAGACTTCTTCCGCAATTTCACCGTGGAGGTCGTTGGTGTTGGCGATACCTGCT
CCTTTGCGCAGATGGATGTTCGCCAGCATGGGCATCCCCAGTGGCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               81-200, + strand, RNAz p=0.926857

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, + strand, RNAz p=0.926857

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-249, gnl|bosTau2|chr2 (65167148-65166900)
               

               
               1-249, gnl|canFam2|chr37 (28772297-28772487)
               

               
               1-249, gnl|danRer3|chr6 (6845704-6845514)
               

               
               1-249, gnl|dasNov1|scaffold_19002 (67805-68001)
               

               
               1-249, gnl|echTel1|scaffold_285380 (5739-5915)
               

               
               1-249, gnl|fr1|chrUn (12981628-12981816)
               

               
               1-249, gnl|galGal2|chrUn (101617931-101618121)
               

               
               1-249, gnl|hg17|chr2 (219914331-219914521)
               

               
               1-249, gnl|Hg17|chr2 (219914579-219914331)
               

               
               1-249, gnl|loxAfr1|scaffold_145 (70945-71135)
               

               
               1-249, gnl|mm7|chr1 (75409440-75409630)
               

               
               1-249, gnl|Mm7|chr1 (75409688-75409440)
               

               
               1-249, gnl|monDom2|scaffold_39 (1330706-1330516)
               

               
               1-249, gnl|oryCun1|scaffold_198528 (99126-99316)
               

               
               1-249, gnl|panTro1|chr13 (110077272-110077462)
               

               
               1-249, gnl|rheMac2|chr12 (83077644-83077834)
               

               
               1-249, gnl|rn3|chr9 (74615727-74615917)
               

               
               1-249, gnl|tetNig1|chr10 (8327671-8327484)
               

               
               1-249, gnl|xenTro1|scaffold_31 (3063263-3063073)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-249, gnl|bosTau2|chr2 (65167148-65166900)
               

               
               1-249, gnl|canFam2|chr37 (28772297-28772487)
               

               
               1-249, gnl|danRer3|chr6 (6845704-6845514)
               

               
               1-249, gnl|dasNov1|scaffold_19002 (67805-68001)
               

               
               1-249, gnl|echTel1|scaffold_285380 (5739-5915)
               

               
               1-249, gnl|fr1|chrUn (12981628-12981816)
               

               
               1-249, gnl|galGal2|chrUn (101617931-101618121)
               

               
               1-249, gnl|hg17|chr2 (219914331-219914521)
               

               
               1-249, gnl|Hg17|chr2 (219914579-219914331)
               

               
               1-249, gnl|loxAfr1|scaffold_145 (70945-71135)
               

               
               1-249, gnl|mm7|chr1 (75409440-75409630)
               

               
               1-249, gnl|Mm7|chr1 (75409688-75409440)
               

               
               1-249, gnl|monDom2|scaffold_39 (1330706-1330516)
               

               
               1-249, gnl|oryCun1|scaffold_198528 (99126-99316)
               

               
               1-249, gnl|panTro1|chr13 (110077272-110077462)
               

               
               1-249, gnl|rheMac2|chr12 (83077644-83077834)
               

               
               1-249, gnl|rn3|chr9 (74615727-74615917)
               

               
               1-249, gnl|tetNig1|chr10 (8327671-8327484)
               

               
               1-249, gnl|xenTro1|scaffold_31 (3063263-3063073)

	1-249, gnl\|bosTau2\|chr2 (65167148-65166900)
	1-249, gnl\|canFam2\|chr37 (28772297-28772487)
	1-249, gnl\|danRer3\|chr6 (6845704-6845514)
	1-249, gnl\|dasNov1\|scaffold_19002 (67805-68001)
	1-249, gnl\|echTel1\|scaffold_285380 (5739-5915)
	1-249, gnl\|fr1\|chrUn (12981628-12981816)
	1-249, gnl\|galGal2\|chrUn (101617931-101618121)
	1-249, gnl\|hg17\|chr2 (219914331-219914521)
	1-249, gnl\|Hg17\|chr2 (219914579-219914331)
	1-249, gnl\|loxAfr1\|scaffold_145 (70945-71135)
	1-249, gnl\|mm7\|chr1 (75409440-75409630)
	1-249, gnl\|Mm7\|chr1 (75409688-75409440)
	1-249, gnl\|monDom2\|scaffold_39 (1330706-1330516)
	1-249, gnl\|oryCun1\|scaffold_198528 (99126-99316)
	1-249, gnl\|panTro1\|chr13 (110077272-110077462)
	1-249, gnl\|rheMac2\|chr12 (83077644-83077834)
	1-249, gnl\|rn3\|chr9 (74615727-74615917)
	1-249, gnl\|tetNig1\|chr10 (8327671-8327484)
	1-249, gnl\|xenTro1\|scaffold_31 (3063263-3063073)