Non-Coding RNA Search

Pig1-112K09

Sequence:


               
               GCTCAGCTCCTCAGGCGAGCTCATGGACCTGACGCCGACGGGCCTCAGCAGCCAGGAGTG
CCTGGCGGTGGACAAGATCCGGACTTCTACCCCCACCGGCCACGGGGCCAGCCCCCCCAA
GCAGGATGACTTGGTCATCTCGGCACGCTAGCACCCCAGGAGCGGCTGCCAGCTGAGGCC
CAGGCCAAAGCTGGTGGCTCCTGCGTCTCCTGGTGACTGCCCCTCACCCCCGCCCCGGGG
CTGGGCGGCTTTGAGGAGAGGGCCACCTGTCCCCGCCCCGCACCGGGGTTGAGGGGGGGG
CAGGGTAGCCTCATGCATTGGGTACTGCTGCTGAGCTGGGGGTCCGCATCCCTACCTCAG
CTTAGGACCCCCCAGAGCCAAGGCAGCTGGGATCTAGGCCTCCCAGAGTGGGAATGAGGG
GGAGGCGTGTGGAGCAAGGAGGTGCCCATGACAGCCCGCCAGAGGGGTCCACTCAGCCTG
ACTGCCCCCCACAGGGACATCCTGGCACTCCCTGTTCCAGGACAGGCCATGGGTATGCCG
ACTCCCCATCACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAGCTCCTCAGGCGAGCTCATGGACCTGACGCCGACGGGCCTCAGCAGCCAGGAGTG
CCTGGCGGTGGACAAGATCCGGACTTCTACCCCCACCGGCCACGGGGCCAGCCCCCCCAA
GCAGGATGACTTGGTCATCTCGGCACGCTAGCACCCCAGGAGCGGCTGCCAGCTGAGGCC
CAGGCCAAAGCTGGTGGCTCCTGCGTCTCCTGGTGACTGCCCCTCACCCCCGCCCCGGGG
CTGGGCGGCTTTGAGGAGAGGGCCACCTGTCCCCGCCCCGCACCGGGGTTGAGGGGGGGG
CAGGGTAGCCTCATGCATTGGGTACTGCTGCTGAGCTGGGGGTCCGCATCCCTACCTCAG
CTTAGGACCCCCCAGAGCCAAGGCAGCTGGGATCTAGGCCTCCCAGAGTGGGAATGAGGG
GGAGGCGTGTGGAGCAAGGAGGTGCCCATGACAGCCCGCCAGAGGGGTCCACTCAGCCTG
ACTGCCCCCCACAGGGACATCCTGGCACTCCCTGTTCCAGGACAGGCCATGGGTATGCCG
ACTCCCCATCACTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               451-555, - strand, RNAz p=0.831469

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-555, - strand, RNAz p=0.831469

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-225, gnl|bosTau2|chr29 (31452150-31452375)
               

               
               2-225, gnl|Hg17|chr11 (61268388-61268609)
               

               
               2-225, gnl|Mm7|chr19 (9927938-9927719)
               


               
               298-555, gnl|bosTau2|chr29 (31452409-31452691)
               

               
               298-555, gnl|Hg17|chr11 (61268639-61268892)
               

               
               298-555, gnl|Mm7|chr19 (9927686-9927455)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-225, gnl|bosTau2|chr29 (31452150-31452375)
               

               
               2-225, gnl|Hg17|chr11 (61268388-61268609)
               

               
               2-225, gnl|Mm7|chr19 (9927938-9927719)
               


               
               298-555, gnl|bosTau2|chr29 (31452409-31452691)
               

               
               298-555, gnl|Hg17|chr11 (61268639-61268892)
               

               
               298-555, gnl|Mm7|chr19 (9927686-9927455)

	2-225, gnl\|bosTau2\|chr29 (31452150-31452375)
	2-225, gnl\|Hg17\|chr11 (61268388-61268609)
	2-225, gnl\|Mm7\|chr19 (9927938-9927719)

	298-555, gnl\|bosTau2\|chr29 (31452409-31452691)
	298-555, gnl\|Hg17\|chr11 (61268639-61268892)
	298-555, gnl\|Mm7\|chr19 (9927686-9927455)