Non-Coding RNA Search

Pig1-112K10

Sequence:


               
               TGCGCCTTTTCAGCTTCTGTCTGCTGCCAATCTAAACCCTGCTAAACCTAACTCAAGTGA
TGCGGTCTTCAAGCACAGAAAAGGCTTTCTAAGCCTGGACCCTTGGCTCAAATCTGTGGT
TCTGGCACCGACTCCCTGAGCAACCTGTTCCCAGCTTGNGAAATAAGTCTCACGACGGAG
CAGCTCAGCCGTTCAGTTTGGCTAACCAGCCTGTTTCCCCCCAGAGTGACATGGCTCAGA
AAATGATCGAAACCAAAATACTCTATTTTCTTTTGACACCAGTTCCTCCTCACTAGTGGC
TAATGAATGGGGGCTGTCGGGCCATGCCCCAAGCCCCCCATGTGGGGCTGACAAGGCCAC
TTGGGAGTTGGAGCATGGCCACCCAAGGGAAGACCGGTCACCCACCACCACCACTAACAA
CTAACCCGGCCCTGCCTGTCCGTGCCCTCACGGGCCTGCCTCTGTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGCCTTTTCAGCTTCTGTCTGCTGCCAATCTAAACCCTGCTAAACCTAACTCAAGTGA
TGCGGTCTTCAAGCACAGAAAAGGCTTTCTAAGCCTGGACCCTTGGCTCAAATCTGTGGT
TCTGGCACCGACTCCCTGAGCAACCTGTTCCCAGCTTGNGAAATAAGTCTCACGACGGAG
CAGCTCAGCCGTTCAGTTTGGCTAACCAGCCTGTTTCCCCCCAGAGTGACATGGCTCAGA
AAATGATCGAAACCAAAATACTCTATTTTCTTTTGACACCAGTTCCTCCTCACTAGTGGC
TAATGAATGGGGGCTGTCGGGCCATGCCCCAAGCCCCCCATGTGGGGCTGACAAGGCCAC
TTGGGAGTTGGAGCATGGCCACCCAAGGGAAGACCGGTCACCCACCACCACCACTAACAA
CTAACCCGGCCCTGCCTGTCCGTGCCCTCACGGGCCTGCCTCTGTCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               252-406, - strand, RNAz p=0.921362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               252-406, - strand, RNAz p=0.921362

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-468, gnl|bosTau2|chr16 (3422354-3422821)
               

               
               1-468, gnl|canFam2|chr38 (4512734-4513843)
               

               
               1-468, gnl|echTel1|scaffold_293891 (6254-5145)
               

               
               1-468, gnl|hg17|chr1 (201685433-201686545)
               

               
               1-468, gnl|Hg17|chr1 (201686224-201686690)
               

               
               1-468, gnl|loxAfr1|scaffold_24447 (25044-26182)
               

               
               1-468, gnl|mm7|chr1 (132500004-132499038)
               

               
               1-468, gnl|Mm7|chr1 (132499300-132498893)
               

               
               1-468, gnl|monDom2|scaffold_13 (6508018-6509370)
               

               
               1-468, gnl|oryCun1|scaffold_185130 (4423-5326)
               

               
               1-468, gnl|panTro1|chr1 (184628687-184629799)
               

               
               1-468, gnl|rheMac2|chr1 (165433217-165432112)
               

               
               1-468, gnl|rn3|chr13 (45499047-45498050)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr16 (3422354-3422821)
               

               
               1-468, gnl|canFam2|chr38 (4512734-4513843)
               

               
               1-468, gnl|echTel1|scaffold_293891 (6254-5145)
               

               
               1-468, gnl|hg17|chr1 (201685433-201686545)
               

               
               1-468, gnl|Hg17|chr1 (201686224-201686690)
               

               
               1-468, gnl|loxAfr1|scaffold_24447 (25044-26182)
               

               
               1-468, gnl|mm7|chr1 (132500004-132499038)
               

               
               1-468, gnl|Mm7|chr1 (132499300-132498893)
               

               
               1-468, gnl|monDom2|scaffold_13 (6508018-6509370)
               

               
               1-468, gnl|oryCun1|scaffold_185130 (4423-5326)
               

               
               1-468, gnl|panTro1|chr1 (184628687-184629799)
               

               
               1-468, gnl|rheMac2|chr1 (165433217-165432112)
               

               
               1-468, gnl|rn3|chr13 (45499047-45498050)

	1-468, gnl\|bosTau2\|chr16 (3422354-3422821)
	1-468, gnl\|canFam2\|chr38 (4512734-4513843)
	1-468, gnl\|echTel1\|scaffold_293891 (6254-5145)
	1-468, gnl\|hg17\|chr1 (201685433-201686545)
	1-468, gnl\|Hg17\|chr1 (201686224-201686690)
	1-468, gnl\|loxAfr1\|scaffold_24447 (25044-26182)
	1-468, gnl\|mm7\|chr1 (132500004-132499038)
	1-468, gnl\|Mm7\|chr1 (132499300-132498893)
	1-468, gnl\|monDom2\|scaffold_13 (6508018-6509370)
	1-468, gnl\|oryCun1\|scaffold_185130 (4423-5326)
	1-468, gnl\|panTro1\|chr1 (184628687-184629799)
	1-468, gnl\|rheMac2\|chr1 (165433217-165432112)
	1-468, gnl\|rn3\|chr13 (45499047-45498050)