Non-Coding RNA Search

Pig1-114D08

Sequence:


               
               TTAGACTTCCAGCTGAAGAAGGCTCAGTCGGCTAGAGGTGAAGCAGCAGACTCCGGCAAG
ATCTTGGCAGACTCCCTGGTCCCCGCTAAAAGAGAGACCCCCCCAAAGAAAGAAACAGTC
CCGGAGGAAACTCAGCAGAAACCCAAGAAGGAGGAGCAGTTTTCACCGCTCTCCCCAAGT
CCCACGGCCACGGCCTGGGGCAGTGGTGCCAGCCCTTCAACAGATCAGCTGCTTTCCACC
ATGACTGTATATTCCAGAGTTGCAGATGTGTACAGCAGCAAGAACACCGAAAGTCTTCAG
CCTGGGTTGCTGTCCTCCACGGAATGCAAGTCTCCTAAGAAATGGGAAAGACCAGCGGCA
GAAAGCCCCGGCCACAACGTCAAAGACCAGAAGGACTTCTTCCAGGAAGCGGCCCCGGAG
AAGGAAGGACTCCAAATTCAACCCCATTTCCAGAAGCAGCTGTCCCCGGAGAGCGCTAGG
AAGATGGCCTCAGAGGGCATGGCCGAGCACTGGGAAGAGGAACTCAGCTGGGAGCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGACTTCCAGCTGAAGAAGGCTCAGTCGGCTAGAGGTGAAGCAGCAGACTCCGGCAAG
ATCTTGGCAGACTCCCTGGTCCCCGCTAAAAGAGAGACCCCCCCAAAGAAAGAAACAGTC
CCGGAGGAAACTCAGCAGAAACCCAAGAAGGAGGAGCAGTTTTCACCGCTCTCCCCAAGT
CCCACGGCCACGGCCTGGGGCAGTGGTGCCAGCCCTTCAACAGATCAGCTGCTTTCCACC
ATGACTGTATATTCCAGAGTTGCAGATGTGTACAGCAGCAAGAACACCGAAAGTCTTCAG
CCTGGGTTGCTGTCCTCCACGGAATGCAAGTCTCCTAAGAAATGGGAAAGACCAGCGGCA
GAAAGCCCCGGCCACAACGTCAAAGACCAGAAGGACTTCTTCCAGGAAGCGGCCCCGGAG
AAGGAAGGACTCCAAATTCAACCCCATTTCCAGAAGCAGCTGTCCCCGGAGAGCGCTAGG
AAGATGGCCTCAGAGGGCATGGCCGAGCACTGGGAAGAGGAACTCAGCTGGGAGCGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-120, - strand, RNAz p=0.871998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, - strand, RNAz p=0.871998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-538, gnl|bosTau2|chr5 (21788099-21788632)
               

               
               2-538, gnl|Hg17|chr12 (48280749-48280225)
               

               
               2-538, gnl|Mm7|chr15 (99265748-99265257)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-538, gnl|bosTau2|chr5 (21788099-21788632)
               

               
               2-538, gnl|Hg17|chr12 (48280749-48280225)
               

               
               2-538, gnl|Mm7|chr15 (99265748-99265257)

	2-538, gnl\|bosTau2\|chr5 (21788099-21788632)
	2-538, gnl\|Hg17\|chr12 (48280749-48280225)
	2-538, gnl\|Mm7\|chr15 (99265748-99265257)