Non-Coding RNA Search

Pig1-114D21

Sequence:


               
               GGTCAGTGGAGAATCCTCTGGTGTTGAAATTGGGAGCAGCCTGCCCTCCGGAGCCTATGA
CGGCAGCGGACTTCCCCTCAGTGCTCCCACTGTCTATCTTGTGGATAGAACTCTGGTGGA
GTCTGTAACCCAGGCTCCAACGGCTCAAGAAGCAGGAGAAGGGCCTCCGGGCACTTTGGA
ACTTAGCGGTGCCCATTCTGGAGTACCAGACATGTCTGGAGACCATTCTGGATCTGTGGA
CCTAAGCGGGCTTCAATCTGGGCTGGCAGAGCCCAGTGGCGAGCCAGCAAGTACTCCATA
TTTTAGTGGGGACTTTTCTGTCACCACCGATATAAGTGGGGACTCCTCTGCAGCCACGAG
CACCAGTGGGGAGGCCTCGGGACTTCCAGAAGTTACTTTAATCGCTTCTGAGTTCGTGGA
GGGTGTTACTGAACCAACCGTTTCTCAGGAACTTGGCCAGAGACCCCCTGTAACCCACAC
GCCCCAGCTTTTTGAGTCCAGTGGAGAAGCCTCTGCATCTGGGGATGTGCCCAGGTTCCC
CGGGTCTGGGGTAGAGGCACCACCAATCCCAGAATCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCAGTGGAGAATCCTCTGGTGTTGAAATTGGGAGCAGCCTGCCCTCCGGAGCCTATGA
CGGCAGCGGACTTCCCCTCAGTGCTCCCACTGTCTATCTTGTGGATAGAACTCTGGTGGA
GTCTGTAACCCAGGCTCCAACGGCTCAAGAAGCAGGAGAAGGGCCTCCGGGCACTTTGGA
ACTTAGCGGTGCCCATTCTGGAGTACCAGACATGTCTGGAGACCATTCTGGATCTGTGGA
CCTAAGCGGGCTTCAATCTGGGCTGGCAGAGCCCAGTGGCGAGCCAGCAAGTACTCCATA
TTTTAGTGGGGACTTTTCTGTCACCACCGATATAAGTGGGGACTCCTCTGCAGCCACGAG
CACCAGTGGGGAGGCCTCGGGACTTCCAGAAGTTACTTTAATCGCTTCTGAGTTCGTGGA
GGGTGTTACTGAACCAACCGTTTCTCAGGAACTTGGCCAGAGACCCCCTGTAACCCACAC
GCCCCAGCTTTTTGAGTCCAGTGGAGAAGCCTCTGCATCTGGGGATGTGCCCAGGTTCCC
CGGGTCTGGGGTAGAGGCACCACCAATCCCAGAATCTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-359, + strand, RNAz p=0.95079

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-359, + strand, RNAz p=0.95079

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-579, gnl|bosTau2|chr21 (14855136-14854558)
               

               
               1-579, gnl|Hg17|chr15 (87202529-87203119)
               

               
               1-579, gnl|Mm7|chr7 (74963307-74963894)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-579, gnl|bosTau2|chr21 (14855136-14854558)
               

               
               1-579, gnl|Hg17|chr15 (87202529-87203119)
               

               
               1-579, gnl|Mm7|chr7 (74963307-74963894)

	1-579, gnl\|bosTau2\|chr21 (14855136-14854558)
	1-579, gnl\|Hg17\|chr15 (87202529-87203119)
	1-579, gnl\|Mm7\|chr7 (74963307-74963894)