Non-Coding RNA Search

Pig1-114D24

Sequence:


               
               GTCTTTTAAAGGCTTATTTTCCGTAGTTAACGAAGCTGATTGAAGATTGCATGGGAAAGT
GAATTATTTGAAGTTAGGAAGAATTGCCGTGACGTCTTTTTATTATTTTTAATATCTATC
CTTATTGCAGTGATGTCTTGGTTTTAGACCAGTAAGCATTGTGTTCACTCTGCTTTTGTG
TTTTGTTGGAACGCAGAGCAGAGCAATGGCCACGCAGGTGATGGGGCAGTCCCCTGGCGG
CGGAGGGCTCTTCCCGGGCAGCGGCGCCGTGGGCATGGCCTTGCCTAACGACATGTATGA
CTTGCCTGATCTCTCGCGAGCGGAGCTGGCCGCGCCTCAGCTCATCATGCTGGCCAACGT
GGCCTTGACCGGGGAGGTCAGCGGCGGCTGCTGTGATTACCTGGTTGGCGAAGAAAGACA
GATGGCGGAATTGATGCCGGTCGGGGACAACAGCTTCTCGGAGAGTGACGGAGAAGGACT
GGAGGAGTCCCCTGATGTCAGAGGCGAAGCCAGGGGACTGGAAAGCATGGAGCTGGAGGG
CTTGGAACCCGGGGTCGTCGAACCGGGACCCGAATGTGCGGGATCCGCTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTTTAAAGGCTTATTTTCCGTAGTTAACGAAGCTGATTGAAGATTGCATGGGAAAGT
GAATTATTTGAAGTTAGGAAGAATTGCCGTGACGTCTTTTTATTATTTTTAATATCTATC
CTTATTGCAGTGATGTCTTGGTTTTAGACCAGTAAGCATTGTGTTCACTCTGCTTTTGTG
TTTTGTTGGAACGCAGAGCAGAGCAATGGCCACGCAGGTGATGGGGCAGTCCCCTGGCGG
CGGAGGGCTCTTCCCGGGCAGCGGCGCCGTGGGCATGGCCTTGCCTAACGACATGTATGA
CTTGCCTGATCTCTCGCGAGCGGAGCTGGCCGCGCCTCAGCTCATCATGCTGGCCAACGT
GGCCTTGACCGGGGAGGTCAGCGGCGGCTGCTGTGATTACCTGGTTGGCGAAGAAAGACA
GATGGCGGAATTGATGCCGGTCGGGGACAACAGCTTCTCGGAGAGTGACGGAGAAGGACT
GGAGGAGTCCCCTGATGTCAGAGGCGAAGCCAGGGGACTGGAAAGCATGGAGCTGGAGGG
CTTGGAACCCGGGGTCGTCGAACCGGGACCCGAATGTGCGGGATCCGCTGCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               163-275, + strand, RNAz p=0.91055

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-275, + strand, RNAz p=0.91055

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005612, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005612, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               124-592, gnl|bosTau2|chr6 (39421338-39420865)
               

               
               124-592, gnl|Hg17|chr4 (57617647-57618122)
               

               
               124-592, gnl|Mm7|chr5 (77199207-77199644)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-592, gnl|bosTau2|chr6 (39421338-39420865)
               

               
               124-592, gnl|Hg17|chr4 (57617647-57618122)
               

               
               124-592, gnl|Mm7|chr5 (77199207-77199644)

	124-592, gnl\|bosTau2\|chr6 (39421338-39420865)
	124-592, gnl\|Hg17\|chr4 (57617647-57618122)
	124-592, gnl\|Mm7\|chr5 (77199207-77199644)