Non-Coding RNA Search

Pig1-115K14

Sequence:


               
               TTCGGGGTACACGCCCCCACCCTTAGCCGCCTCTTCCACTGCCATGCAGGCCTTCTCCAG
CATCAGGTTATCCTGGGAAGGAGGGACAAAGAGGTTAAGGAGGAAGGGCTTTTTTTCAGG
GACAGTTTTAGGTAACATTCCTACATCTCCCTCAAATTGGCTGACTCCCTGGGAAGCGTC
CAAGGTCAAGGCCAATGCTCAGAGTCAGTGTTAGAGAGAATGCTTCACACAGACACTGAA
CAAGTAGTTGTTGACTAGTGGAAGTCAAGACCCAGGTTACAGTCGCAGTTCCAAACTAAC
TTAGCTATTCCCAGCCAAGTCCCATCATCTTTCTGAGGCCTTCCCCAGGTTCTCCATCCT
GGTGATCACCTTGGTCCCTAAACTACAGGCCATGTTTCCTTATCTGTAAAATAGGAATAA
TCCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGGGTACACGCCCCCACCCTTAGCCGCCTCTTCCACTGCCATGCAGGCCTTCTCCAG
CATCAGGTTATCCTGGGAAGGAGGGACAAAGAGGTTAAGGAGGAAGGGCTTTTTTTCAGG
GACAGTTTTAGGTAACATTCCTACATCTCCCTCAAATTGGCTGACTCCCTGGGAAGCGTC
CAAGGTCAAGGCCAATGCTCAGAGTCAGTGTTAGAGAGAATGCTTCACACAGACACTGAA
CAAGTAGTTGTTGACTAGTGGAAGTCAAGACCCAGGTTACAGTCGCAGTTCCAAACTAAC
TTAGCTATTCCCAGCCAAGTCCCATCATCTTTCTGAGGCCTTCCCCAGGTTCTCCATCCT
GGTGATCACCTTGGTCCCTAAACTACAGGCCATGTTTCCTTATCTGTAAAATAGGAATAA
TCCTAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.897651
               

               
               156-271, - strand, RNAz p=0.945329

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.897651
               

               
               156-271, - strand, RNAz p=0.945329

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-371, gnl|bosTau2|chr28 (22938273-22937898)
               

               
               1-371, gnl|Hg17|chr10 (75228837-75228466)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-371, gnl|bosTau2|chr28 (22938273-22937898)
               

               
               1-371, gnl|Hg17|chr10 (75228837-75228466)

	1-118, - strand, RNAz p=0.897651
	156-271, - strand, RNAz p=0.945329

	1-371, gnl\|bosTau2\|chr28 (22938273-22937898)
	1-371, gnl\|Hg17\|chr10 (75228837-75228466)