Non-Coding RNA Search

Pig1-115N13

Sequence:


               
               GGAAGATGCTGCCGCCGGGGCCCCGGCCGCCGGGGGGAAAGCGCCGCCCACACCCCCCGA
GGGCGTTGTGACCGAGGCGGAGGTGCTGTCCTCGCAGGAGAGAATTAAGGTGCAAGGAAG
CCCTTTAAAAAAACTGTTCACAAGCACTGGCTTAAAAAAGCTTTCTGGAAAGAAACAGAA
AGGGAAAAGAGGAGGAGGAGATGACGAGTCCGGGGAGCAGCATCCAGCCTCTGCAGAGTC
TCCCGACAGCCCCGACGAAGCGAAGGGTGAGAGCTCGGCCTCGTCCCCGGAAGAACCGGA
GGAGATCACGTGTCTGGAGAAAGGCGTAGCCGAGGCCCCCCAGGACGTGGAGACGGAGGA
AGGGACCACTTCCGATGGAGAGAAAAAGAGGGAAGGTGTGACCCCCTGGGCATCTTTCAA
AAAGATGGTGACGCCCAAGAAACGGGTGAGAAGGCTTTCTGAAAGTGATAAGGAGGACGA
ATTGGACAAGGTCAAGAGCGCCACCCTGTCTTCCACGGAGAGCGCAGCCTCCGAAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGATGCTGCCGCCGGGGCCCCGGCCGCCGGGGGGAAAGCGCCGCCCACACCCCCCGA
GGGCGTTGTGACCGAGGCGGAGGTGCTGTCCTCGCAGGAGAGAATTAAGGTGCAAGGAAG
CCCTTTAAAAAAACTGTTCACAAGCACTGGCTTAAAAAAGCTTTCTGGAAAGAAACAGAA
AGGGAAAAGAGGAGGAGGAGATGACGAGTCCGGGGAGCAGCATCCAGCCTCTGCAGAGTC
TCCCGACAGCCCCGACGAAGCGAAGGGTGAGAGCTCGGCCTCGTCCCCGGAAGAACCGGA
GGAGATCACGTGTCTGGAGAAAGGCGTAGCCGAGGCCCCCCAGGACGTGGAGACGGAGGA
AGGGACCACTTCCGATGGAGAGAAAAAGAGGGAAGGTGTGACCCCCTGGGCATCTTTCAA
AAAGATGGTGACGCCCAAGAAACGGGTGAGAAGGCTTTCTGAAAGTGATAAGGAGGACGA
ATTGGACAAGGTCAAGAGCGCCACCCTGTCTTCCACGGAGAGCGCAGCCTCCGAAATGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               76-195, - strand, RNAz p=0.952349
               

               
               344-500, + strand, RNAz p=0.989038

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-195, - strand, RNAz p=0.952349
               

               
               344-500, + strand, RNAz p=0.989038

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-535, gnl|bosTau2|chr9 (52939656-52939152)
               

               
               37-535, gnl|Hg17|chr6 (151763098-151763596)
               

               
               37-535, gnl|Mm7|chr10 (5992891-5992387)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-535, gnl|bosTau2|chr9 (52939656-52939152)
               

               
               37-535, gnl|Hg17|chr6 (151763098-151763596)
               

               
               37-535, gnl|Mm7|chr10 (5992891-5992387)

	76-195, - strand, RNAz p=0.952349
	344-500, + strand, RNAz p=0.989038

	37-535, gnl\|bosTau2\|chr9 (52939656-52939152)
	37-535, gnl\|Hg17\|chr6 (151763098-151763596)
	37-535, gnl\|Mm7\|chr10 (5992891-5992387)