Non-Coding RNA Search

Pig1-116I05

Sequence:


               
               CCCTCGAGAGCCTGCCTCGGGCTCGGGCCTCCTTCGCACCTGAGCCTCGTTGCCGGCGGC
AAAGATGATGATGTGGTCCAACTTCTTCCTGCAAGAGGAGGACCGGCGGCGAGGGGCCGC
GAGCCGGCGGCGGGCTCACAAGTCCGGCAGGATGACCCCGGAGCAGGAGGGCAAGATCAA
GCTGGCGCTGCTGCTGACCTCCGTGGGCGCCACGCTGGCCGTGCTGGCCGTGGGCACCGA
GTTCTGGGTGGAACTCAACACCTACAGGGACAACGGCAGTGCCGTCTGCGATGCAGCTCA
CCTGGGGCTCTGGAAGATGTGCACCAAGCGACTGTGGCAGGCGGACATGCCGGCGGGCAG
AGACACCTGCGGTCCCGCGGAGCTGCCTGGAGAAGCAAACTGCACTTACTTTAAATTCTT
CACCACGGGAGAGAATGCACGCATCTTCCAGAGAACCACAAAGAAAGAGGTGAATGTGGC
AGCTGCGGTGATAGCAGTGCTAGGCCTGGTAGTCATGGCCCTGGGGTGCCTCTGTATCAT
CATGGTGCTCAGCAAAGGTGCAGAGTTCCTGCTCCGGGTGGGAGCGGTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCGAGAGCCTGCCTCGGGCTCGGGCCTCCTTCGCACCTGAGCCTCGTTGCCGGCGGC
AAAGATGATGATGTGGTCCAACTTCTTCCTGCAAGAGGAGGACCGGCGGCGAGGGGCCGC
GAGCCGGCGGCGGGCTCACAAGTCCGGCAGGATGACCCCGGAGCAGGAGGGCAAGATCAA
GCTGGCGCTGCTGCTGACCTCCGTGGGCGCCACGCTGGCCGTGCTGGCCGTGGGCACCGA
GTTCTGGGTGGAACTCAACACCTACAGGGACAACGGCAGTGCCGTCTGCGATGCAGCTCA
CCTGGGGCTCTGGAAGATGTGCACCAAGCGACTGTGGCAGGCGGACATGCCGGCGGGCAG
AGACACCTGCGGTCCCGCGGAGCTGCCTGGAGAAGCAAACTGCACTTACTTTAAATTCTT
CACCACGGGAGAGAATGCACGCATCTTCCAGAGAACCACAAAGAAAGAGGTGAATGTGGC
AGCTGCGGTGATAGCAGTGCTAGGCCTGGTAGTCATGGCCCTGGGGTGCCTCTGTATCAT
CATGGTGCTCAGCAAAGGTGCAGAGTTCCTGCTCCGGGTGGGAGCGGTCTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|20987368|gb|AAH21552.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20987368|gb|AAH21552.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               112-225, + strand, RNAz p=0.991426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-225, + strand, RNAz p=0.991426

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-392, gnl|bosTau2|chr18 (52762941-52762545)
               

               
               1-392, gnl|Hg17|chr19 (59187885-59188274)
               

               
               1-392, gnl|Mm7|chrUn_random (11914127-11913726)
               


               
               466-592, gnl|bosTau2|chr18 (52756561-52756435)
               

               
               466-592, gnl|canFam2|chr1 (106312461-106312292)
               

               
               466-592, gnl|danRer3|chr19 (12990380-12990543)
               

               
               466-592, gnl|echTel1|scaffold_220861 (1539-1362)
               

               
               466-592, gnl|hg17|chr19 (59194668-59194848)
               

               
               466-592, gnl|Hg17|chr19 (59194698-59194824)
               

               
               466-592, gnl|monDom2|scaffold_1988 (1308-1481)
               

               
               466-592, gnl|oryCun1|scaffold_128658 (5476-5655)
               

               
               466-592, gnl|panTro1|chr20 (56609954-56610134)
               

               
               466-592, gnl|rheMac2|chr19 (60097531-60097711)
               

               
               466-592, gnl|rn3|chr1 (64128798-64128619)
               

               
               466-592, gnl|tetNig1|chr8 (8278972-8279143)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-392, gnl|bosTau2|chr18 (52762941-52762545)
               

               
               1-392, gnl|Hg17|chr19 (59187885-59188274)
               

               
               1-392, gnl|Mm7|chrUn_random (11914127-11913726)
               


               
               466-592, gnl|bosTau2|chr18 (52756561-52756435)
               

               
               466-592, gnl|canFam2|chr1 (106312461-106312292)
               

               
               466-592, gnl|danRer3|chr19 (12990380-12990543)
               

               
               466-592, gnl|echTel1|scaffold_220861 (1539-1362)
               

               
               466-592, gnl|hg17|chr19 (59194668-59194848)
               

               
               466-592, gnl|Hg17|chr19 (59194698-59194824)
               

               
               466-592, gnl|monDom2|scaffold_1988 (1308-1481)
               

               
               466-592, gnl|oryCun1|scaffold_128658 (5476-5655)
               

               
               466-592, gnl|panTro1|chr20 (56609954-56610134)
               

               
               466-592, gnl|rheMac2|chr19 (60097531-60097711)
               

               
               466-592, gnl|rn3|chr1 (64128798-64128619)
               

               
               466-592, gnl|tetNig1|chr8 (8278972-8279143)

	1-392, gnl\|bosTau2\|chr18 (52762941-52762545)
	1-392, gnl\|Hg17\|chr19 (59187885-59188274)
	1-392, gnl\|Mm7\|chrUn_random (11914127-11913726)

	466-592, gnl\|bosTau2\|chr18 (52756561-52756435)
	466-592, gnl\|canFam2\|chr1 (106312461-106312292)
	466-592, gnl\|danRer3\|chr19 (12990380-12990543)
	466-592, gnl\|echTel1\|scaffold_220861 (1539-1362)
	466-592, gnl\|hg17\|chr19 (59194668-59194848)
	466-592, gnl\|Hg17\|chr19 (59194698-59194824)
	466-592, gnl\|monDom2\|scaffold_1988 (1308-1481)
	466-592, gnl\|oryCun1\|scaffold_128658 (5476-5655)
	466-592, gnl\|panTro1\|chr20 (56609954-56610134)
	466-592, gnl\|rheMac2\|chr19 (60097531-60097711)
	466-592, gnl\|rn3\|chr1 (64128798-64128619)
	466-592, gnl\|tetNig1\|chr8 (8278972-8279143)