Non-Coding RNA Search

Pig1-116L06

Sequence:


               
               GGGCTGTCCCCCAGTGGAGCTGGTGGCAATGACACAGAACTGGTGGCCTGCCTGCGGACG
CGNGACAGCTCAGATCTCGTGGACCACGAGTGGCATGTGCTGCCTCAGGGAAAGCGTCTT
CCGCTTCTCCTTCGTGCCTGTGGTGGACGGAGACTTTCTCAGTGACACGCCTGAGGCCCT
CATCAATGCTGGAGACTTCCACAGCCTACAGGTGACTAGTGGCTGGAGGGGGTGGAGCTT
GTTCCTCTAGGCCTGTTCTCCCACCCGCCCCTCCCCCTGGGAACCCAGACAAGAGGGCTC
AAGACCCAGTCCCAAAGGTCCAGGCTCCTGGGCCCCATGGCCACCTCCTCTTCCCTCAGG
ACCCAATCCCAGGGTGGTCCGGGGGACAGAGAGGAAAGGAAATGTGGGCGTATTTTCTCG
TGCTCTCCTTCCCTTTCCCAATCTCCAGTTCTCTTCCTCCCTGGTTCTGGGTCTATAACT
GTTCATCTCTCTGGCTCTTTGTCCATCTGTTTCTGTCTGCCTGTCTGTCTGTGCTTCCCC
ACCCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTGTCCCCCAGTGGAGCTGGTGGCAATGACACAGAACTGGTGGCCTGCCTGCGGACG
CGNGACAGCTCAGATCTCGTGGACCACGAGTGGCATGTGCTGCCTCAGGGAAAGCGTCTT
CCGCTTCTCCTTCGTGCCTGTGGTGGACGGAGACTTTCTCAGTGACACGCCTGAGGCCCT
CATCAATGCTGGAGACTTCCACAGCCTACAGGTGACTAGTGGCTGGAGGGGGTGGAGCTT
GTTCCTCTAGGCCTGTTCTCCCACCCGCCCCTCCCCCTGGGAACCCAGACAAGAGGGCTC
AAGACCCAGTCCCAAAGGTCCAGGCTCCTGGGCCCCATGGCCACCTCCTCTTCCCTCAGG
ACCCAATCCCAGGGTGGTCCGGGGGACAGAGAGGAAAGGAAATGTGGGCGTATTTTCTCG
TGCTCTCCTTCCCTTTCCCAATCTCCAGTTCTCTTCCTCCCTGGTTCTGGGTCTATAACT
GTTCATCTCTCTGGCTCTTTGTCCATCTGTTTCTGTCTGCCTGTCTGTCTGTGCTTCCCC
ACCCCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-353, - strand, RNAz p=0.941273

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-353, - strand, RNAz p=0.941273

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               231-342, + strand, RNAmicro p=0.934451

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               231-342, + strand, RNAmicro p=0.934451

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-540, gnl|bosTau2|chr25 (32918662-32919202)
               

               
               1-540, gnl|Hg17|chr7 (100135647-100135124)
               

               
               1-540, gnl|Mm7|chr5 (136209159-136209707)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr25 (32918662-32919202)
               

               
               1-540, gnl|Hg17|chr7 (100135647-100135124)
               

               
               1-540, gnl|Mm7|chr5 (136209159-136209707)

	1-540, gnl\|bosTau2\|chr25 (32918662-32919202)
	1-540, gnl\|Hg17\|chr7 (100135647-100135124)
	1-540, gnl\|Mm7\|chr5 (136209159-136209707)