Non-Coding RNA Search

Pig1-116M07

Sequence:


               
               TGTGGTACAAGTTAACTATCATATAGATCTGTGTTCATTTTTGCTGGGTAAAGAGTGAGG
TCAATGAAACTAAGGTTTTTGGGTCAAATTTTTCTCGTTCTGAGTGTAACTCAGTGCTTG
TAGGTCCATGTAATTTATGAAAGGAAGTTGTAAGAGAAGAATTTGGTCCGTATTATAGTA
CCATAAAGTTAAAATCAAGTCTTCAATTTAAAAAGAAGCACATTTACTTTTAGAAAAAAA
TTGCCTCTAGGGCACTAGATAGAGTGTGAGCTTTATGACATAAAATAGTGGTCCTTGTTT
TAAAGCACATTTTGAGTTACAGTTACATATATTCATCTTCATTAGTGCTATATTGAACTA
AAACCATTATACCAACTTCATTGAATTATTATTTAATCAGGTTGGGAATGTCTATCATTC
TTTGACTTAAATTTGTTTATATTGTTTTTCAAGTTATTCACAAATTTTGGTGGTTTCATT
TGTGTCAGCGTTGTGTGTGTGTGTGTGTATGTATATACATATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGTACAAGTTAACTATCATATAGATCTGTGTTCATTTTTGCTGGGTAAAGAGTGAGG
TCAATGAAACTAAGGTTTTTGGGTCAAATTTTTCTCGTTCTGAGTGTAACTCAGTGCTTG
TAGGTCCATGTAATTTATGAAAGGAAGTTGTAAGAGAAGAATTTGGTCCGTATTATAGTA
CCATAAAGTTAAAATCAAGTCTTCAATTTAAAAAGAAGCACATTTACTTTTAGAAAAAAA
TTGCCTCTAGGGCACTAGATAGAGTGTGAGCTTTATGACATAAAATAGTGGTCCTTGTTT
TAAAGCACATTTTGAGTTACAGTTACATATATTCATCTTCATTAGTGCTATATTGAACTA
AAACCATTATACCAACTTCATTGAATTATTATTTAATCAGGTTGGGAATGTCTATCATTC
TTTGACTTAAATTTGTTTATATTGTTTTTCAAGTTATTCACAAATTTTGGTGGTTTCATT
TGTGTCAGCGTTGTGTGTGTGTGTGTGTATGTATATACATATGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               405-524, + strand, RNAz p=0.668332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-524, + strand, RNAz p=0.668332

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-524, gnl|bosTau2|chr4 (5063539-5064067)
               

               
               1-524, gnl|Hg17|chr7 (10794698-10795208)
               

               
               1-524, gnl|Mm7|chr6 (11870203-11870692)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-524, gnl|bosTau2|chr4 (5063539-5064067)
               

               
               1-524, gnl|Hg17|chr7 (10794698-10795208)
               

               
               1-524, gnl|Mm7|chr6 (11870203-11870692)

	1-524, gnl\|bosTau2\|chr4 (5063539-5064067)
	1-524, gnl\|Hg17\|chr7 (10794698-10795208)
	1-524, gnl\|Mm7\|chr6 (11870203-11870692)