Non-Coding RNA Search

Pig1-116O20

Sequence:


               
               AGCGAGCTTAGCTGAGGAAGGAAAGAACTGGATGGTGGGATTTGGGGGCCAGTTTCTTGA
CTGAGAGAAGAAAAGCACTCTCCTTTGATGTCTTAAGCAGAATTCATTCTCCCTGGAAGC
AGTTCTCCATGAACGTACAGCCCTCTCACTGGTGGTTTCTGTGATTGTATGCATTTTGAA
GATGCTTTTCAGCAGTGCCTCACCACACCAGAAATTATTTCTAAACTTTGGATCCTTAAT
GAAGAGTGATATCATTTGGGATCCTCGGGGTTTTTCAGTGTCTGTAATAGCTAACATTGA
ATCACATAGGATTATTTGTGTACAGCTGTGCATGTTCAAAACTACCATTTATGGAGCCCT
TACTTTGTGTCAGGTACTGTTCTAAGTGCTTTGTACCATCTACAAAGCATGTTATTTGTT
AACTGTAAGATAGTCCTCACACAGTCCTCTGGATTTGTTACTAGTAATTAATGTTTCCAT
TTTATAAATAACGAAATCATGGTTCCAGAATGTTAAACAATTTGCTTGGTGTCACAGTCA
GTAATTGATAGTGCCACAATTCACTTTTCTGGTGCAAGAGCCCTCACTTTCAACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGAGCTTAGCTGAGGAAGGAAAGAACTGGATGGTGGGATTTGGGGGCCAGTTTCTTGA
CTGAGAGAAGAAAAGCACTCTCCTTTGATGTCTTAAGCAGAATTCATTCTCCCTGGAAGC
AGTTCTCCATGAACGTACAGCCCTCTCACTGGTGGTTTCTGTGATTGTATGCATTTTGAA
GATGCTTTTCAGCAGTGCCTCACCACACCAGAAATTATTTCTAAACTTTGGATCCTTAAT
GAAGAGTGATATCATTTGGGATCCTCGGGGTTTTTCAGTGTCTGTAATAGCTAACATTGA
ATCACATAGGATTATTTGTGTACAGCTGTGCATGTTCAAAACTACCATTTATGGAGCCCT
TACTTTGTGTCAGGTACTGTTCTAAGTGCTTTGTACCATCTACAAAGCATGTTATTTGTT
AACTGTAAGATAGTCCTCACACAGTCCTCTGGATTTGTTACTAGTAATTAATGTTTCCAT
TTTATAAATAACGAAATCATGGTTCCAGAATGTTAAACAATTTGCTTGGTGTCACAGTCA
GTAATTGATAGTGCCACAATTCACTTTTCTGGTGCAAGAGCCCTCACTTTCAACCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               375-494, - strand, RNAz p=0.657207

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-494, - strand, RNAz p=0.657207

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-597, gnl|bosTau2|chr4 (49995778-49996383)
               

               
               5-597, gnl|Hg17|chr7 (128190423-128189846)
               

               
               5-597, gnl|Mm7|chr6 (29474925-29474432)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-597, gnl|bosTau2|chr4 (49995778-49996383)
               

               
               5-597, gnl|Hg17|chr7 (128190423-128189846)
               

               
               5-597, gnl|Mm7|chr6 (29474925-29474432)

	5-597, gnl\|bosTau2\|chr4 (49995778-49996383)
	5-597, gnl\|Hg17\|chr7 (128190423-128189846)
	5-597, gnl\|Mm7\|chr6 (29474925-29474432)