Non-Coding RNA Search

Pig1-117D01

Sequence:


               
               AGGACTGTTTACTAATCGACTATTGTTACTATGGCAATTAATAGCTCAGAAAATTGCAGA
TGCTACATTTCAGACATCAAGCTCTTTGCAGAGGAAATGCACAGACCAACCGAAGTGCAT
TGGTGCTTCAGGTCTGCAGCAGCCTGCTTTATTTTAAAGACCGCCTCCTTAGCATGCGCG
CCCTTCTGTATCTTCTTTGCTTGCTTCAATAAACTAATTTGCCTCAAATATGTTTCATTT
TCCTCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACTGTTTACTAATCGACTATTGTTACTATGGCAATTAATAGCTCAGAAAATTGCAGA
TGCTACATTTCAGACATCAAGCTCTTTGCAGAGGAAATGCACAGACCAACCGAAGTGCAT
TGGTGCTTCAGGTCTGCAGCAGCCTGCTTTATTTTAAAGACCGCCTCCTTAGCATGCGCG
CCCTTCTGTATCTTCTTTGCTTGCTTCAATAAACTAATTTGCCTCAAATATGTTTCATTT
TCCTCATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               80-196, + strand, RNAz p=0.72434

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-196, + strand, RNAz p=0.72434

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-248, gnl|bosTau2|chr2 (27582438-27582685)
               

               
               1-248, gnl|canFam2|chr36 (7575080-7575686)
               

               
               1-248, gnl|dasNov1|scaffold_1803 (75564-76161)
               

               
               1-248, gnl|echTel1|scaffold_316828 (84036-84629)
               

               
               1-248, gnl|hg17|chr2 (159359461-159360065)
               

               
               1-248, gnl|Hg17|chr2 (159359705-159359952)
               

               
               1-248, gnl|loxAfr1|scaffold_2774 (61944-62565)
               

               
               1-248, gnl|mm7|chr2 (59281701-59282331)
               

               
               1-248, gnl|Mm7|chr2 (59281965-59282207)
               

               
               1-248, gnl|monDom2|scaffold_2 (52373935-52374575)
               

               
               1-248, gnl|oryCun1|scaffold_205366 (5994-5388)
               

               
               1-248, gnl|panTro1|chr13 (48696117-48696721)
               

               
               1-248, gnl|rheMac2|chr12 (22259207-22259808)
               

               
               1-248, gnl|rn3|chr3 (40955157-40955806)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-248, gnl|bosTau2|chr2 (27582438-27582685)
               

               
               1-248, gnl|canFam2|chr36 (7575080-7575686)
               

               
               1-248, gnl|dasNov1|scaffold_1803 (75564-76161)
               

               
               1-248, gnl|echTel1|scaffold_316828 (84036-84629)
               

               
               1-248, gnl|hg17|chr2 (159359461-159360065)
               

               
               1-248, gnl|Hg17|chr2 (159359705-159359952)
               

               
               1-248, gnl|loxAfr1|scaffold_2774 (61944-62565)
               

               
               1-248, gnl|mm7|chr2 (59281701-59282331)
               

               
               1-248, gnl|Mm7|chr2 (59281965-59282207)
               

               
               1-248, gnl|monDom2|scaffold_2 (52373935-52374575)
               

               
               1-248, gnl|oryCun1|scaffold_205366 (5994-5388)
               

               
               1-248, gnl|panTro1|chr13 (48696117-48696721)
               

               
               1-248, gnl|rheMac2|chr12 (22259207-22259808)
               

               
               1-248, gnl|rn3|chr3 (40955157-40955806)

	1-248, gnl\|bosTau2\|chr2 (27582438-27582685)
	1-248, gnl\|canFam2\|chr36 (7575080-7575686)
	1-248, gnl\|dasNov1\|scaffold_1803 (75564-76161)
	1-248, gnl\|echTel1\|scaffold_316828 (84036-84629)
	1-248, gnl\|hg17\|chr2 (159359461-159360065)
	1-248, gnl\|Hg17\|chr2 (159359705-159359952)
	1-248, gnl\|loxAfr1\|scaffold_2774 (61944-62565)
	1-248, gnl\|mm7\|chr2 (59281701-59282331)
	1-248, gnl\|Mm7\|chr2 (59281965-59282207)
	1-248, gnl\|monDom2\|scaffold_2 (52373935-52374575)
	1-248, gnl\|oryCun1\|scaffold_205366 (5994-5388)
	1-248, gnl\|panTro1\|chr13 (48696117-48696721)
	1-248, gnl\|rheMac2\|chr12 (22259207-22259808)
	1-248, gnl\|rn3\|chr3 (40955157-40955806)