Non-Coding RNA Search

Pig1-117F12

Sequence:


               
               CCACCGGGCTCCACCTGGCTGTGGTACCACGCCTGTGGGGGCATCGACCTGGTCAAGAGT
GTGACCGGCACATCCGGGACTGTCTTCAAGTTTTATCAGTCCTCGAACAAGAGGCTGAGA
GAGCTGCAGGAAGGCGCGGCGCCGCTGGAGCAGGAGATCCTGCGGCTGAAGGACCTGAAT
GCTGTCAGGTGGGTGGCCAGCAGGAGGCGCACACTGGATGCACTCCTCGTGAGCTGGCCC
GCCCTGGCCAGGCACCTCCAGAGGGTGGCAGAAGCGGGTGGCCAGGTCGGGCACAGGGCC
AAAGGCCTGCTGAAGCTGATGAAGAACTTCCATTTCGTCAAGTTCTGCCACTTCCTTTTG
GACTTCCTGAGCATCTACAGGCCCTTGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCGGGCTCCACCTGGCTGTGGTACCACGCCTGTGGGGGCATCGACCTGGTCAAGAGT
GTGACCGGCACATCCGGGACTGTCTTCAAGTTTTATCAGTCCTCGAACAAGAGGCTGAGA
GAGCTGCAGGAAGGCGCGGCGCCGCTGGAGCAGGAGATCCTGCGGCTGAAGGACCTGAAT
GCTGTCAGGTGGGTGGCCAGCAGGAGGCGCACACTGGATGCACTCCTCGTGAGCTGGCCC
GCCCTGGCCAGGCACCTCCAGAGGGTGGCAGAAGCGGGTGGCCAGGTCGGGCACAGGGCC
AAAGGCCTGCTGAAGCTGATGAAGAACTTCCATTTCGTCAAGTTCTGCCACTTCCTTTTG
GACTTCCTGAGCATCTACAGGCCCTTGTCG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-238, - strand, RNAz p=0.699056
               

               
               110-331, + strand, RNAz p=0.91939

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-238, - strand, RNAz p=0.699056
               

               
               110-331, + strand, RNAz p=0.91939

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK125321, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK125321, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-389, gnl|bosTau2|chr4 (64993045-64993431)
               

               
               1-389, gnl|canFam2|chr16 (17584277-17585732)
               

               
               1-389, gnl|dasNov1|scaffold_35409 (10653-12108)
               

               
               1-389, gnl|hg17|chr7 (148995705-148997160)
               

               
               1-389, gnl|Hg17|chr7 (148996075-148996461)
               

               
               1-389, gnl|mm7|chr6 (48488981-48490419)
               

               
               1-389, gnl|Mm7|chr6 (48489350-48489720)
               

               
               1-389, gnl|monDom2|scaffold_7 (9873729-9875184)
               

               
               1-389, gnl|oryCun1|scaffold_215377 (49730-48275)
               

               
               1-389, gnl|panTro1|chr6 (151830071-151831526)
               

               
               1-389, gnl|rheMac2|chr3 (187161230-187162685)
               

               
               1-389, gnl|rn3|chr4 (76888951-76890406)
               

               
               1-389, gnl|xenTro1|scaffold_266 (423006-421506)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-389, gnl|bosTau2|chr4 (64993045-64993431)
               

               
               1-389, gnl|canFam2|chr16 (17584277-17585732)
               

               
               1-389, gnl|dasNov1|scaffold_35409 (10653-12108)
               

               
               1-389, gnl|hg17|chr7 (148995705-148997160)
               

               
               1-389, gnl|Hg17|chr7 (148996075-148996461)
               

               
               1-389, gnl|mm7|chr6 (48488981-48490419)
               

               
               1-389, gnl|Mm7|chr6 (48489350-48489720)
               

               
               1-389, gnl|monDom2|scaffold_7 (9873729-9875184)
               

               
               1-389, gnl|oryCun1|scaffold_215377 (49730-48275)
               

               
               1-389, gnl|panTro1|chr6 (151830071-151831526)
               

               
               1-389, gnl|rheMac2|chr3 (187161230-187162685)
               

               
               1-389, gnl|rn3|chr4 (76888951-76890406)
               

               
               1-389, gnl|xenTro1|scaffold_266 (423006-421506)

	40-238, - strand, RNAz p=0.699056
	110-331, + strand, RNAz p=0.91939

	1-389, gnl\|bosTau2\|chr4 (64993045-64993431)
	1-389, gnl\|canFam2\|chr16 (17584277-17585732)
	1-389, gnl\|dasNov1\|scaffold_35409 (10653-12108)
	1-389, gnl\|hg17\|chr7 (148995705-148997160)
	1-389, gnl\|Hg17\|chr7 (148996075-148996461)
	1-389, gnl\|mm7\|chr6 (48488981-48490419)
	1-389, gnl\|Mm7\|chr6 (48489350-48489720)
	1-389, gnl\|monDom2\|scaffold_7 (9873729-9875184)
	1-389, gnl\|oryCun1\|scaffold_215377 (49730-48275)
	1-389, gnl\|panTro1\|chr6 (151830071-151831526)
	1-389, gnl\|rheMac2\|chr3 (187161230-187162685)
	1-389, gnl\|rn3\|chr4 (76888951-76890406)
	1-389, gnl\|xenTro1\|scaffold_266 (423006-421506)