Non-Coding RNA Search

Pig1-117L03

Sequence:


               
               AACAGCACCACCTGCTCCAGCATATAAAGGCTTTAATCCTTCTGAGACCAAGATTCGAAC
ACCTGATGGGAAAGTGTGGCAGGAGGCTGAGTTTCAAAACATGAGTAGAGAACTGTATCG
TGACTTATCACTTCACTTTGCAGATGATGGCTCTATGAAAGAGAAACCTGCTGATAAAAC
TAAAGAGAAGAAGGCGGTCAAGCCAGTACGAAAAGTCCAAAAGGTAGCACAGTTGTCAAG
TCCAGAATGCAAAACAGGTAGCAGTCATCTGATAAGTACATCTTCTTGGCGAGATGGGCA
AAAATTAGTAAAGAAAATTCTGGGACCTGCACCCAGAATAGAGCAAAAAGAGCGAACAAC
AGCATCAAGTGACAGAAGTGGAAGAGAAAGAATTACTAAATCTGGAGGTCATGTTGGAAG
AGCANAATCAGATCCCAGATTGGATGTTTCACATAGACATCTTCCACGAAACTCAGAACG
TTCTAGAAGTAGAGCTCGGTCAGAAAATAATGTGAAGAAATCAGCCCCACCTCTTCCAGA
TAATAAACAGGAGGAAAATGCTGCCTTAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGCACCACCTGCTCCAGCATATAAAGGCTTTAATCCTTCTGAGACCAAGATTCGAAC
ACCTGATGGGAAAGTGTGGCAGGAGGCTGAGTTTCAAAACATGAGTAGAGAACTGTATCG
TGACTTATCACTTCACTTTGCAGATGATGGCTCTATGAAAGAGAAACCTGCTGATAAAAC
TAAAGAGAAGAAGGCGGTCAAGCCAGTACGAAAAGTCCAAAAGGTAGCACAGTTGTCAAG
TCCAGAATGCAAAACAGGTAGCAGTCATCTGATAAGTACATCTTCTTGGCGAGATGGGCA
AAAATTAGTAAAGAAAATTCTGGGACCTGCACCCAGAATAGAGCAAAAAGAGCGAACAAC
AGCATCAAGTGACAGAAGTGGAAGAGAAAGAATTACTAAATCTGGAGGTCATGTTGGAAG
AGCANAATCAGATCCCAGATTGGATGTTTCACATAGACATCTTCCACGAAACTCAGAACG
TTCTAGAAGTAGAGCTCGGTCAGAAAATAATGTGAAGAAATCAGCCCCACCTCTTCCAGA
TAATAAACAGGAGGAAAATGCTGCCTTAAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               256-374, + strand, RNAz p=0.520175

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-374, + strand, RNAz p=0.520175

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               256-405, gnl|bosTau2|chr16 (46087289-46087438)
               

               
               256-405, gnl|canFam2|chr7 (16534142-16534339)
               

               
               256-405, gnl|echTel1|scaffold_311911 (91643-91805)
               

               
               256-405, gnl|fr1|chrUn (101098933-101098786)
               

               
               256-405, gnl|galGal2|chr8 (6053673-6053516)
               

               
               256-405, gnl|hg17|chr1 (176712713-176712874)
               

               
               256-405, gnl|Hg17|chr1 (176712719-176712868)
               

               
               256-405, gnl|mm7|chr1 (155897861-155897701)
               

               
               256-405, gnl|Mm7|chr1 (155897854-155897705)
               

               
               256-405, gnl|monDom2|scaffold_16 (32858367-32858528)
               

               
               256-405, gnl|oryCun1|scaffold_11244 (6145-5953)
               

               
               256-405, gnl|panTro1|chr1 (159080059-159080220)
               

               
               256-405, gnl|rheMac2|chr1 (190719883-190719722)
               

               
               256-405, gnl|rn3|chr13 (70963828-70963671)
               

               
               256-405, gnl|xenTro1|scaffold_236 (580423-580261)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               256-405, gnl|bosTau2|chr16 (46087289-46087438)
               

               
               256-405, gnl|canFam2|chr7 (16534142-16534339)
               

               
               256-405, gnl|echTel1|scaffold_311911 (91643-91805)
               

               
               256-405, gnl|fr1|chrUn (101098933-101098786)
               

               
               256-405, gnl|galGal2|chr8 (6053673-6053516)
               

               
               256-405, gnl|hg17|chr1 (176712713-176712874)
               

               
               256-405, gnl|Hg17|chr1 (176712719-176712868)
               

               
               256-405, gnl|mm7|chr1 (155897861-155897701)
               

               
               256-405, gnl|Mm7|chr1 (155897854-155897705)
               

               
               256-405, gnl|monDom2|scaffold_16 (32858367-32858528)
               

               
               256-405, gnl|oryCun1|scaffold_11244 (6145-5953)
               

               
               256-405, gnl|panTro1|chr1 (159080059-159080220)
               

               
               256-405, gnl|rheMac2|chr1 (190719883-190719722)
               

               
               256-405, gnl|rn3|chr13 (70963828-70963671)
               

               
               256-405, gnl|xenTro1|scaffold_236 (580423-580261)

	256-405, gnl\|bosTau2\|chr16 (46087289-46087438)
	256-405, gnl\|canFam2\|chr7 (16534142-16534339)
	256-405, gnl\|echTel1\|scaffold_311911 (91643-91805)
	256-405, gnl\|fr1\|chrUn (101098933-101098786)
	256-405, gnl\|galGal2\|chr8 (6053673-6053516)
	256-405, gnl\|hg17\|chr1 (176712713-176712874)
	256-405, gnl\|Hg17\|chr1 (176712719-176712868)
	256-405, gnl\|mm7\|chr1 (155897861-155897701)
	256-405, gnl\|Mm7\|chr1 (155897854-155897705)
	256-405, gnl\|monDom2\|scaffold_16 (32858367-32858528)
	256-405, gnl\|oryCun1\|scaffold_11244 (6145-5953)
	256-405, gnl\|panTro1\|chr1 (159080059-159080220)
	256-405, gnl\|rheMac2\|chr1 (190719883-190719722)
	256-405, gnl\|rn3\|chr13 (70963828-70963671)
	256-405, gnl\|xenTro1\|scaffold_236 (580423-580261)