Non-Coding RNA Search

Pig1-118B02

Sequence:


               
               CACCTCTGCGATCTACACCATtcacggcaacgccagaaccttaacccgctgagcgaggcc
agggatcgaacctgcatcctcaggatgctaatcagattcactaaccgctgagccacgacT
GGGAACCCCAAGACATAGCACTTTTAATGGAATTCTTGAGTAAAAGCCCAGGCAGTTGCA
GGGAGTGAATGGGAGATGAAATGAAGGAGAAAGATAGACCCCAGCAGGGAGAAGCAGGAG
AACCGCAGGGCCAGGCTGTCCCTGAAGAGCAGGGGGAGTGGGCAGGAGGGAGGGATGTAC
AGTGTGGGACCGACCTTCTTCCGAAGGGAATGGGGCTTGCTGGCTGGAGGGACAATCTGA
AGGACCTACCTGGGGTCCCTGCCATGTCTGCATGGTGTGTGCACAGTCGTGTAGATGTGT
GTAAACCTGGGGCTGAGGTTGTTTCTTCAGCAGGATATGAGAGTGAACACATCTGAGTGC
AGGTGTCTGGCCGGGAACCCTTTGCCAGCTGTGCCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCTCTGCGATCTACACCATtcacggcaacgccagaaccttaacccgctgagcgaggcc
agggatcgaacctgcatcctcaggatgctaatcagattcactaaccgctgagccacgacT
GGGAACCCCAAGACATAGCACTTTTAATGGAATTCTTGAGTAAAAGCCCAGGCAGTTGCA
GGGAGTGAATGGGAGATGAAATGAAGGAGAAAGATAGACCCCAGCAGGGAGAAGCAGGAG
AACCGCAGGGCCAGGCTGTCCCTGAAGAGCAGGGGGAGTGGGCAGGAGGGAGGGATGTAC
AGTGTGGGACCGACCTTCTTCCGAAGGGAATGGGGCTTGCTGGCTGGAGGGACAATCTGA
AGGACCTACCTGGGGTCCCTGCCATGTCTGCATGGTGTGTGCACAGTCGTGTAGATGTGT
GTAAACCTGGGGCTGAGGTTGTTTCTTCAGCAGGATATGAGAGTGAACACATCTGAGTGC
AGGTGTCTGGCCGGGAACCCTTTGCCAGCTGTGCCACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               249-367, + strand, RNAz p=0.570865

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-367, + strand, RNAz p=0.570865

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               130-518, gnl|bosTau2|chr19 (31120994-31121394)
               

               
               130-518, gnl|canFam2|chr9 (27653673-27654210)
               

               
               130-518, gnl|hg17|chr17 (43458989-43459500)
               

               
               130-518, gnl|Hg17|chr17 (43459650-43459276)
               

               
               130-518, gnl|loxAfr1|scaffold_26936 (10903-10431)
               

               
               130-518, gnl|mm7|chr11 (96969789-96969315)
               

               
               130-518, gnl|monDom2|scaffold_18 (46432443-46431877)
               

               
               130-518, gnl|panTro1|chr19_random (42395653-42396165)
               

               
               130-518, gnl|rheMac2|chr16 (32242462-32242979)
               

               
               130-518, gnl|rn3|chr10 (85636416-85635964)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               130-518, gnl|bosTau2|chr19 (31120994-31121394)
               

               
               130-518, gnl|canFam2|chr9 (27653673-27654210)
               

               
               130-518, gnl|hg17|chr17 (43458989-43459500)
               

               
               130-518, gnl|Hg17|chr17 (43459650-43459276)
               

               
               130-518, gnl|loxAfr1|scaffold_26936 (10903-10431)
               

               
               130-518, gnl|mm7|chr11 (96969789-96969315)
               

               
               130-518, gnl|monDom2|scaffold_18 (46432443-46431877)
               

               
               130-518, gnl|panTro1|chr19_random (42395653-42396165)
               

               
               130-518, gnl|rheMac2|chr16 (32242462-32242979)
               

               
               130-518, gnl|rn3|chr10 (85636416-85635964)

	130-518, gnl\|bosTau2\|chr19 (31120994-31121394)
	130-518, gnl\|canFam2\|chr9 (27653673-27654210)
	130-518, gnl\|hg17\|chr17 (43458989-43459500)
	130-518, gnl\|Hg17\|chr17 (43459650-43459276)
	130-518, gnl\|loxAfr1\|scaffold_26936 (10903-10431)
	130-518, gnl\|mm7\|chr11 (96969789-96969315)
	130-518, gnl\|monDom2\|scaffold_18 (46432443-46431877)
	130-518, gnl\|panTro1\|chr19_random (42395653-42396165)
	130-518, gnl\|rheMac2\|chr16 (32242462-32242979)
	130-518, gnl\|rn3\|chr10 (85636416-85635964)