Non-Coding RNA Search

Pig1-118H02

Sequence:


               
               GCCGAGCGGTGCCGAGCAGATCTGATGGTGCTCCTGAGAACGGCTTCGGCAGGCGTTCTG
TGAGCTAAGCCCTAACTGTCCGGAAGAGTGCAAGCAGATACCTGTTACCTGATCAGAAGG
ATTGACTCAGCTCACTGGGCTGTGGACATCCCTGGGCCCCTCCATCTGGGCCCCTGTGGA
TAGGAGGGGCCAGGCGAGCAGGCAGCTGGGCTATGGTTTGGTGCCTCAGTCTGGCCATCC
TCAGCCTCATCATCAGCCAGGGGGCTGACGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGAGCGGTGCCGAGCAGATCTGATGGTGCTCCTGAGAACGGCTTCGGCAGGCGTTCTG
TGAGCTAAGCCCTAACTGTCCGGAAGAGTGCAAGCAGATACCTGTTACCTGATCAGAAGG
ATTGACTCAGCTCACTGGGCTGTGGACATCCCTGGGCCCCTCCATCTGGGCCCCTGTGGA
TAGGAGGGGCCAGGCGAGCAGGCAGCTGGGCTATGGTTTGGTGCCTCAGTCTGGCCATCC
TCAGCCTCATCATCAGCCAGGGGGCTGACGGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               94-272, - strand, RNAz p=0.992941
               

               
               98-228, - strand, RNAz p=0.922266

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-272, - strand, RNAz p=0.992941
               

               
               98-228, - strand, RNAz p=0.922266

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               18-272, gnl|bosTau2|chr3 (5754673-5754926)
               

               
               18-272, gnl|canFam2|chr38 (25220102-25219687)
               

               
               18-272, gnl|dasNov1|scaffold_7270 (63481-63931)
               

               
               18-272, gnl|echTel1|scaffold_301125 (9277-8830)
               

               
               18-272, gnl|hg17|chr1 (156726150-156726583)
               

               
               18-272, gnl|Hg17|chr1 (156726493-156726258)
               

               
               18-272, gnl|mm7|chr1 (172454825-172454365)
               

               
               18-272, gnl|Mm7|chr1 (172454452-172454721)
               

               
               18-272, gnl|monDom2|scaffold_13 (61754703-61754160)
               

               
               18-272, gnl|oryCun1|scaffold_122179 (23701-23292)
               

               
               18-272, gnl|panTro1|chr1 (138808318-138808751)
               

               
               18-272, gnl|rheMac2|chr1 (138558568-138559001)
               

               
               18-272, gnl|rn3|chr13 (88678444-88678001)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-272, gnl|bosTau2|chr3 (5754673-5754926)
               

               
               18-272, gnl|canFam2|chr38 (25220102-25219687)
               

               
               18-272, gnl|dasNov1|scaffold_7270 (63481-63931)
               

               
               18-272, gnl|echTel1|scaffold_301125 (9277-8830)
               

               
               18-272, gnl|hg17|chr1 (156726150-156726583)
               

               
               18-272, gnl|Hg17|chr1 (156726493-156726258)
               

               
               18-272, gnl|mm7|chr1 (172454825-172454365)
               

               
               18-272, gnl|Mm7|chr1 (172454452-172454721)
               

               
               18-272, gnl|monDom2|scaffold_13 (61754703-61754160)
               

               
               18-272, gnl|oryCun1|scaffold_122179 (23701-23292)
               

               
               18-272, gnl|panTro1|chr1 (138808318-138808751)
               

               
               18-272, gnl|rheMac2|chr1 (138558568-138559001)
               

               
               18-272, gnl|rn3|chr13 (88678444-88678001)

	94-272, - strand, RNAz p=0.992941
	98-228, - strand, RNAz p=0.922266

	18-272, gnl\|bosTau2\|chr3 (5754673-5754926)
	18-272, gnl\|canFam2\|chr38 (25220102-25219687)
	18-272, gnl\|dasNov1\|scaffold_7270 (63481-63931)
	18-272, gnl\|echTel1\|scaffold_301125 (9277-8830)
	18-272, gnl\|hg17\|chr1 (156726150-156726583)
	18-272, gnl\|Hg17\|chr1 (156726493-156726258)
	18-272, gnl\|mm7\|chr1 (172454825-172454365)
	18-272, gnl\|Mm7\|chr1 (172454452-172454721)
	18-272, gnl\|monDom2\|scaffold_13 (61754703-61754160)
	18-272, gnl\|oryCun1\|scaffold_122179 (23701-23292)
	18-272, gnl\|panTro1\|chr1 (138808318-138808751)
	18-272, gnl\|rheMac2\|chr1 (138558568-138559001)
	18-272, gnl\|rn3\|chr13 (88678444-88678001)