Non-Coding RNA Search

Pig1-118M10

Sequence:


               
               ATTCACTGTGATCATGAGGGGGAAAGGGACAGGGAATTAGGAAAACAAGGAGATTTTTCT
TCAAACTCTGTATACTTTTGTTAAATTTGTTATAGCCAACGGGCACTGCTTTTATAATTA
AGAAAATATGTACAGGTTCAAAAGAGACGTAAAGGGAATTGAGAGTGTACAGGTGGGCTC
ACCCTAATGCACCCCTCACATGCCTTGGCCCTGGCTCCCAGGGGCATCTAATCTGCAGGG
AAGAGGGTCAAGGTCGGGCGTGTTTTGTCAGGAGACCTCAGTGATCATGGTCCTTCTTTG
GGGCACTGCAAGCCCAGAATATATATGAGGCCTCCAATGACAAGGACTCCCGGAAACGTT
GCTGTGACGATTAAATGAGATAATGTATTAAAGACACTAGGAAAGTAGCTGGCTTGTAGT
AAGACTTCCATCACTAGCAGCTCTTAGTTACTATTATTATTACTTAAGTGGATCCTGCAG
CCCAGCCCTGCAGAGTGCTCCTCGACTTCCAGATCCCACTCGCTGGCACAGATGTTAAGC
ATTCAAAGCAGGTGTACAGATGCTTAGTTTCATGTCAGGGCTATAACTGCACTTAATTGC
CAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCACTGTGATCATGAGGGGGAAAGGGACAGGGAATTAGGAAAACAAGGAGATTTTTCT
TCAAACTCTGTATACTTTTGTTAAATTTGTTATAGCCAACGGGCACTGCTTTTATAATTA
AGAAAATATGTACAGGTTCAAAAGAGACGTAAAGGGAATTGAGAGTGTACAGGTGGGCTC
ACCCTAATGCACCCCTCACATGCCTTGGCCCTGGCTCCCAGGGGCATCTAATCTGCAGGG
AAGAGGGTCAAGGTCGGGCGTGTTTTGTCAGGAGACCTCAGTGATCATGGTCCTTCTTTG
GGGCACTGCAAGCCCAGAATATATATGAGGCCTCCAATGACAAGGACTCCCGGAAACGTT
GCTGTGACGATTAAATGAGATAATGTATTAAAGACACTAGGAAAGTAGCTGGCTTGTAGT
AAGACTTCCATCACTAGCAGCTCTTAGTTACTATTATTATTACTTAAGTGGATCCTGCAG
CCCAGCCCTGCAGAGTGCTCCTCGACTTCCAGATCCCACTCGCTGGCACAGATGTTAAGC
ATTCAAAGCAGGTGTACAGATGCTTAGTTTCATGTCAGGGCTATAACTGCACTTAATTGC
CAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               159-315, + strand, RNAz p=0.939364

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-315, + strand, RNAz p=0.939364

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-604, gnl|bosTau2|chr9 (19963182-19963776)
               

               
               1-604, gnl|Hg17|chr6 (112015139-112014647)
               

               
               1-604, gnl|Mm7|chr10 (39408541-39409098)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-604, gnl|bosTau2|chr9 (19963182-19963776)
               

               
               1-604, gnl|Hg17|chr6 (112015139-112014647)
               

               
               1-604, gnl|Mm7|chr10 (39408541-39409098)

	1-604, gnl\|bosTau2\|chr9 (19963182-19963776)
	1-604, gnl\|Hg17\|chr6 (112015139-112014647)
	1-604, gnl\|Mm7\|chr10 (39408541-39409098)