Non-Coding RNA Search

Pig1-119D03

Sequence:


               
               TTGGGAGCCCGGTGAGAGCAGGGACCATGTCTGTTTGTTCATCACTGTTACAAGCTCAAA
TGTGTTCAGGGATCAGCTTTAAAAAAAAACAAACAAACAAGTGAATGAAATTACAGGAAA
GGAAAAAAAGGTAACAGTTGGCAATGGAAGCAGTAGGGAGAAGTTGGGACTGACCAGCTG
AAGGCTGCTATGGGCAGCTGGTTATCTTCTTCCTGGCAGCATTCTGATTTTTCTGGAAAA
GTCAGAGAGCTGGAATTTTAGAGGAAACCTCCATAGTCTTCTTTGTGGCTAATGGAAGTT
TCTCAGATACTGTGCTAGGAACCGCCACAAATCCTTGAGCTCCATCAGGCTCGCACATCA
CTTCTGTTTATGCCCAGTGTCAGGTACCAGGTAGACCCTAATAGCCATAAAACCGCCCAA
CCAAGTGCTGCATGCTAGGCAGTGTTCTAGACACTTGACGCGGATTGACTCATTTAATTC
TCACAACAACCTTGGGAGATAGGGATTATTACTACCCTTCATTTTCTGTATGAGGGCAGG
AAAACACTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGGAGCCCGGTGAGAGCAGGGACCATGTCTGTTTGTTCATCACTGTTACAAGCTCAAA
TGTGTTCAGGGATCAGCTTTAAAAAAAAACAAACAAACAAGTGAATGAAATTACAGGAAA
GGAAAAAAAGGTAACAGTTGGCAATGGAAGCAGTAGGGAGAAGTTGGGACTGACCAGCTG
AAGGCTGCTATGGGCAGCTGGTTATCTTCTTCCTGGCAGCATTCTGATTTTTCTGGAAAA
GTCAGAGAGCTGGAATTTTAGAGGAAACCTCCATAGTCTTCTTTGTGGCTAATGGAAGTT
TCTCAGATACTGTGCTAGGAACCGCCACAAATCCTTGAGCTCCATCAGGCTCGCACATCA
CTTCTGTTTATGCCCAGTGTCAGGTACCAGGTAGACCCTAATAGCCATAAAACCGCCCAA
CCAAGTGCTGCATGCTAGGCAGTGTTCTAGACACTTGACGCGGATTGACTCATTTAATTC
TCACAACAACCTTGGGAGATAGGGATTATTACTACCCTTCATTTTCTGTATGAGGGCAGG
AAAACACTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               83-367, + strand, RNAz p=0.999964

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-367, + strand, RNAz p=0.999964

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               146-229, + strand, RNAmicro p=0.946363

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               146-229, + strand, RNAmicro p=0.946363

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-441, gnl|bosTau2|chr11 (36012363-36011929)
               

               
               5-441, gnl|Hg17|chr2 (88586716-88585979)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-441, gnl|bosTau2|chr11 (36012363-36011929)
               

               
               5-441, gnl|Hg17|chr2 (88586716-88585979)

	5-441, gnl\|bosTau2\|chr11 (36012363-36011929)
	5-441, gnl\|Hg17\|chr2 (88586716-88585979)