Non-Coding RNA Search

Pig1-11A11

Sequence:


               
               GGACAGCGGCACCGCATTCCAGCCAAGGAGGATACTCGGGAGGGTGGACGCAGAGATCCT
AGGTCCCCTGGTCGACATCGGCTTGGTCGGAAACGGAGTCAGGCAGATAAGCGCAGAGGA
CTGGGATTGTGGGGAGCAGAGGAACTGTGTCAGCTTGGACAGGCAGGCTTCTGGTGGCTG
ATCGAACTGCTGGTATTAGTGGGGGAGTACGTGGAAACTTGTGGCCATCTCATCTATGCA
TGCAGGCAGCTGAAAGGCAGTGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAGCGGCACCGCATTCCAGCCAAGGAGGATACTCGGGAGGGTGGACGCAGAGATCCT
AGGTCCCCTGGTCGACATCGGCTTGGTCGGAAACGGAGTCAGGCAGATAAGCGCAGAGGA
CTGGGATTGTGGGGAGCAGAGGAACTGTGTCAGCTTGGACAGGCAGGCTTCTGGTGGCTG
ATCGAACTGCTGGTATTAGTGGGGGAGTACGTGGAAACTTGTGGCCATCTCATCTATGCA
TGCAGGCAGCTGAAAGGCAGTGATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               41-160, - strand, RNAz p=0.765182

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.765182

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-265, gnl|bosTau2|chr5 (35046748-35047011)
               

               
               2-265, gnl|canFam2|chr10 (3193208-3193449)
               

               
               2-265, gnl|dasNov1|scaffold_113691 (9071-8845)
               

               
               2-265, gnl|echTel1|scaffold_221306 (7590-7350)
               

               
               2-265, gnl|hg17|chr12 (54507791-54508032)
               

               
               2-265, gnl|Hg17|chr12 (54508123-54507860)
               

               
               2-265, gnl|mm7|chr10 (128308902-128308661)
               

               
               2-265, gnl|Mm7|chr10 (128308568-128308831)
               

               
               2-265, gnl|panTro1|chr10 (55735018-55735259)
               

               
               2-265, gnl|rheMac2|chr11 (52887652-52887893)
               

               
               2-265, gnl|rn3|chr7 (2106871-2106630)
               

               
               2-265, gnl|xenTro1|scaffold_85 (1532074-1531831)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-265, gnl|bosTau2|chr5 (35046748-35047011)
               

               
               2-265, gnl|canFam2|chr10 (3193208-3193449)
               

               
               2-265, gnl|dasNov1|scaffold_113691 (9071-8845)
               

               
               2-265, gnl|echTel1|scaffold_221306 (7590-7350)
               

               
               2-265, gnl|hg17|chr12 (54507791-54508032)
               

               
               2-265, gnl|Hg17|chr12 (54508123-54507860)
               

               
               2-265, gnl|mm7|chr10 (128308902-128308661)
               

               
               2-265, gnl|Mm7|chr10 (128308568-128308831)
               

               
               2-265, gnl|panTro1|chr10 (55735018-55735259)
               

               
               2-265, gnl|rheMac2|chr11 (52887652-52887893)
               

               
               2-265, gnl|rn3|chr7 (2106871-2106630)
               

               
               2-265, gnl|xenTro1|scaffold_85 (1532074-1531831)

	2-265, gnl\|bosTau2\|chr5 (35046748-35047011)
	2-265, gnl\|canFam2\|chr10 (3193208-3193449)
	2-265, gnl\|dasNov1\|scaffold_113691 (9071-8845)
	2-265, gnl\|echTel1\|scaffold_221306 (7590-7350)
	2-265, gnl\|hg17\|chr12 (54507791-54508032)
	2-265, gnl\|Hg17\|chr12 (54508123-54507860)
	2-265, gnl\|mm7\|chr10 (128308902-128308661)
	2-265, gnl\|Mm7\|chr10 (128308568-128308831)
	2-265, gnl\|panTro1\|chr10 (55735018-55735259)
	2-265, gnl\|rheMac2\|chr11 (52887652-52887893)
	2-265, gnl\|rn3\|chr7 (2106871-2106630)
	2-265, gnl\|xenTro1\|scaffold_85 (1532074-1531831)