Pig1-120E14
|
GCCACCCCACAACAGCCTCCCCAAGCCTGAACCAGATGCCAAGACGCGAGGGGAGGGGGA
CGGCCGAGGCTGCGAGAAAGCAGAGAAGAGGCCTGAGAGGCCCGAAGTGAAGGGCGAGCC
GCAGCTCAAAGCCAATGGCGTCCACGCTGGACCAGAACCAGCCTCAGAGCCAGGCAGCCC
TTACCCCGAGGGCCCAAGGGTCCCAGGAGGCGGGGAGCAGCCTGCTCAGCCCAACGGCTG
GCCGTATAGCTCCCCCAGTCGGCCGGGGAGCACGGCTTTCCCGTCCCAGGACTCAGAGAG
TGGGGGGCATCGGCGGAGCTTCCCTCCACGTGCCAATGCTGACAAAATCGCGCAGCGCAA
GAGCTCCATGAACCAGCTTCAGCAGTGGGTGAACCTGCGCCGAGGGGTGCCCCCTCCTGA
AGACCTGCGGAGTCCCTCTAGGTTCTACCCTGTGTCCCGTAGGGTCCCTGAGTATTACAG
CCCCTACTCCTCCCAGTACCCTGACGATTACCAGTACTACCCGCCAGGGGTGCGGCCAGA
CAGCATCTGCTCGATGCCCGCCTATGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCACCCCACAACAGCCTCCCCAAGCCTGAACCAGATGCCAAGACGCGAGGGGAGGGGGA
CGGCCGAGGCTGCGAGAAAGCAGAGAAGAGGCCTGAGAGGCCCGAAGTGAAGGGCGAGCC
GCAGCTCAAAGCCAATGGCGTCCACGCTGGACCAGAACCAGCCTCAGAGCCAGGCAGCCC
TTACCCCGAGGGCCCAAGGGTCCCAGGAGGCGGGGAGCAGCCTGCTCAGCCCAACGGCTG
GCCGTATAGCTCCCCCAGTCGGCCGGGGAGCACGGCTTTCCCGTCCCAGGACTCAGAGAG
TGGGGGGCATCGGCGGAGCTTCCCTCCACGTGCCAATGCTGACAAAATCGCGCAGCGCAA
GAGCTCCATGAACCAGCTTCAGCAGTGGGTGAACCTGCGCCGAGGGGTGCCCCCTCCTGA
AGACCTGCGGAGTCCCTCTAGGTTCTACCCTGTGTCCCGTAGGGTCCCTGAGTATTACAG
CCCCTACTCCTCCCAGTACCCTGACGATTACCAGTACTACCCGCCAGGGGTGCGGCCAGA
CAGCATCTGCTCGATGCCCGCCTATGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
188-280, + strand, RNAmicro p=0.980558 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
188-280, + strand, RNAmicro p=0.980558 |
|
5-432, gnl|bosTau2|chr16 (2124520-2124947) |
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5-432, gnl|canFam2|chr38 (3824487-3824844) |
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5-432, gnl|danRer3|chr11 (20597266-20596915) |
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5-432, gnl|dasNov1|scaffold_16842 (34281-34638) |
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5-432, gnl|echTel1|scaffold_213345 (1058-1418) |
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5-432, gnl|galGal2|chr26 (357403-357757) |
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5-432, gnl|hg17|chr1 (200960039-200960396) |
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5-432, gnl|Hg17|chr1 (200960470-200960043) |
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5-432, gnl|loxAfr1|scaffold_89137 (10037-9677) |
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5-432, gnl|mm7|chr1 (133173617-133173260) |
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5-432, gnl|Mm7|chr1 (133173184-133173611) |
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5-432, gnl|monDom2|scaffold_13 (5379561-5379918) |
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5-432, gnl|oryCun1|scaffold_202428 (36860-37203) |
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5-432, gnl|panTro1|chr1 (183901515-183901872) |
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5-432, gnl|rheMac2|chr1 (166174388-166174031) |
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5-432, gnl|rn3|chr13 (46202491-46202134) |
|
5-432, gnl|xenTro1|scaffold_704 (485195-484877) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-432, gnl|bosTau2|chr16 (2124520-2124947) |
|
5-432, gnl|canFam2|chr38 (3824487-3824844) |
|
5-432, gnl|danRer3|chr11 (20597266-20596915) |
|
5-432, gnl|dasNov1|scaffold_16842 (34281-34638) |
|
5-432, gnl|echTel1|scaffold_213345 (1058-1418) |
|
5-432, gnl|galGal2|chr26 (357403-357757) |
|
5-432, gnl|hg17|chr1 (200960039-200960396) |
|
5-432, gnl|Hg17|chr1 (200960470-200960043) |
|
5-432, gnl|loxAfr1|scaffold_89137 (10037-9677) |
|
5-432, gnl|mm7|chr1 (133173617-133173260) |
|
5-432, gnl|Mm7|chr1 (133173184-133173611) |
|
5-432, gnl|monDom2|scaffold_13 (5379561-5379918) |
|
5-432, gnl|oryCun1|scaffold_202428 (36860-37203) |
|
5-432, gnl|panTro1|chr1 (183901515-183901872) |
|
5-432, gnl|rheMac2|chr1 (166174388-166174031) |
|
5-432, gnl|rn3|chr13 (46202491-46202134) |
|
5-432, gnl|xenTro1|scaffold_704 (485195-484877) |
