Non-Coding RNA Search

Pig1-120J24

Sequence:


               
               AATCCATGGGATTTGTTGTTGGGACACCCAGCAGTCAGTCTGGGCTATGCCACTTAGCAG
TTGAGTGAACCCCAACACCTGCACGGCAGTTTCATCACCTGGAAACGGGGCCAGTACCGC
TTACATGTCAGGTCTCCTGAGAAGACCAAATTAAACAATGACTGCGaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCATGGGATTTGTTGTTGGGACACCCAGCAGTCAGTCTGGGCTATGCCACTTAGCAG
TTGAGTGAACCCCAACACCTGCACGGCAGTTTCATCACCTGGAAACGGGGCCAGTACCGC
TTACATGTCAGGTCTCCTGAGAAGACCAAATTAAACAATGACTGCGaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGGGGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               14-122, - strand, RNAz p=0.657896

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-122, - strand, RNAz p=0.657896

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-168, gnl|bosTau2|chr8 (11573880-11573710)
               

               
               1-168, gnl|canFam2|chr21 (26583435-26582516)
               

               
               1-168, gnl|dasNov1|scaffold_82682 (5978-5064)
               

               
               1-168, gnl|hg17|chr11 (74225963-74226827)
               

               
               1-168, gnl|loxAfr1|scaffold_16716 (51327-50416)
               

               
               1-168, gnl|mm7|chr7 (95955529-95954766)
               

               
               1-168, gnl|monDom2|scaffold_74 (2387799-2386954)
               

               
               1-168, gnl|oryCun1|scaffold_183812 (90450-91309)
               

               
               1-168, gnl|panTro1|chr9 (75513654-75514519)
               

               
               1-168, gnl|rheMac2|chr14 (73007726-73008595)
               

               
               1-168, gnl|rn3|chr1 (157367043-157366205)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-168, gnl|bosTau2|chr8 (11573880-11573710)
               

               
               1-168, gnl|canFam2|chr21 (26583435-26582516)
               

               
               1-168, gnl|dasNov1|scaffold_82682 (5978-5064)
               

               
               1-168, gnl|hg17|chr11 (74225963-74226827)
               

               
               1-168, gnl|loxAfr1|scaffold_16716 (51327-50416)
               

               
               1-168, gnl|mm7|chr7 (95955529-95954766)
               

               
               1-168, gnl|monDom2|scaffold_74 (2387799-2386954)
               

               
               1-168, gnl|oryCun1|scaffold_183812 (90450-91309)
               

               
               1-168, gnl|panTro1|chr9 (75513654-75514519)
               

               
               1-168, gnl|rheMac2|chr14 (73007726-73008595)
               

               
               1-168, gnl|rn3|chr1 (157367043-157366205)

	1-168, gnl\|bosTau2\|chr8 (11573880-11573710)
	1-168, gnl\|canFam2\|chr21 (26583435-26582516)
	1-168, gnl\|dasNov1\|scaffold_82682 (5978-5064)
	1-168, gnl\|hg17\|chr11 (74225963-74226827)
	1-168, gnl\|loxAfr1\|scaffold_16716 (51327-50416)
	1-168, gnl\|mm7\|chr7 (95955529-95954766)
	1-168, gnl\|monDom2\|scaffold_74 (2387799-2386954)
	1-168, gnl\|oryCun1\|scaffold_183812 (90450-91309)
	1-168, gnl\|panTro1\|chr9 (75513654-75514519)
	1-168, gnl\|rheMac2\|chr14 (73007726-73008595)
	1-168, gnl\|rn3\|chr1 (157367043-157366205)