Non-Coding RNA Search

Pig1-120N21

Sequence:


               
               CCGGGAAGGACCTCGGGCGCCCGGGCAGCAAGCTGCCCCCTCCACTCAGTGCTCCCGTGG
CCGGGCTGGCAGCCCTGAAGGCCCACGCCAAGGAAGCATGCAGTGGCCCCAGCTTCATGG
CCACCCCAGAGAACCTGGCCAGCCTGATGAAGGGCATGGCTGGCAGCCCCAGCCGAGGCG
GCATCAGTTGGCAGAGCTCCATCATGCACTACATGAATCGGATGAGCCAGAGCCAGGCCC
AGGCTGCTGGCAGACTGGCTCTCAGGGCCCCAACCCCTGGCAAGTGCAGCCTAGGGCTGG
ACCTCAAGGTGAGGACGCAGAAGGGGGAGCTGGGGATAAGCCCCCCAGGAGGCAAAGGCC
CAAAGGCCCCTAGCAGCGGGGCTGTGGAGCAGAAAGCAGGGAGGACAGGAGGGCCCTCTC
ACGTCCACAGCAGCAGCAAGGTCCCTGCTGGGTGCCTGGGCTCCCAGCCCCCACCCACCC
AGGAGCTGAGCCTCCAGGTCTTGGACTTACAGAGTGTTAAGAATGGCACACCAGGGGTGG
GCCTGGTCGCCCGCCACACCACAGCCACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGAAGGACCTCGGGCGCCCGGGCAGCAAGCTGCCCCCTCCACTCAGTGCTCCCGTGG
CCGGGCTGGCAGCCCTGAAGGCCCACGCCAAGGAAGCATGCAGTGGCCCCAGCTTCATGG
CCACCCCAGAGAACCTGGCCAGCCTGATGAAGGGCATGGCTGGCAGCCCCAGCCGAGGCG
GCATCAGTTGGCAGAGCTCCATCATGCACTACATGAATCGGATGAGCCAGAGCCAGGCCC
AGGCTGCTGGCAGACTGGCTCTCAGGGCCCCAACCCCTGGCAAGTGCAGCCTAGGGCTGG
ACCTCAAGGTGAGGACGCAGAAGGGGGAGCTGGGGATAAGCCCCCCAGGAGGCAAAGGCC
CAAAGGCCCCTAGCAGCGGGGCTGTGGAGCAGAAAGCAGGGAGGACAGGAGGGCCCTCTC
ACGTCCACAGCAGCAGCAAGGTCCCTGCTGGGTGCCTGGGCTCCCAGCCCCCACCCACCC
AGGAGCTGAGCCTCCAGGTCTTGGACTTACAGAGTGTTAAGAATGGCACACCAGGGGTGG
GCCTGGTCGCCCGCCACACCACAGCCACCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               80-239, - strand, RNAz p=0.834486
               

               
               437-556, - strand, RNAz p=0.921115

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.834486
               

               
               437-556, - strand, RNAz p=0.921115

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               46-203, - strand, RNAmicro p=0.997402
               

               
               370-490, - strand, RNAmicro p=0.979155

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               46-203, - strand, RNAmicro p=0.997402
               

               
               370-490, - strand, RNAmicro p=0.979155

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-570, gnl|bosTau2|chr19 (46928544-46929110)
               

               
               1-570, gnl|Hg17|chr17 (75372403-75372972)
               

               
               1-570, gnl|Mm7|chr11 (119137224-119137751)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-570, gnl|bosTau2|chr19 (46928544-46929110)
               

               
               1-570, gnl|Hg17|chr17 (75372403-75372972)
               

               
               1-570, gnl|Mm7|chr11 (119137224-119137751)

	80-239, - strand, RNAz p=0.834486
	437-556, - strand, RNAz p=0.921115

	46-203, - strand, RNAmicro p=0.997402
	370-490, - strand, RNAmicro p=0.979155

	1-570, gnl\|bosTau2\|chr19 (46928544-46929110)
	1-570, gnl\|Hg17\|chr17 (75372403-75372972)
	1-570, gnl\|Mm7\|chr11 (119137224-119137751)