Non-Coding RNA Search

Pig1-123D09

Sequence:


               
               CGCCATCATCCGCCGCGGTGCGCGGAACAGGTGGTGTTGAAGGTGCGAGCGGCGAGAACC
GCTGGGATTGCTGACGGACAGGTGGGCTGGGCATCGGGCCTCTGGACTGGAGGCAGCGAC
CCGGACCTGATCTGACCCGGACCCTAAATCAGTCCTCGCCCACCTGGGCGAACGCGCGCG
CTCCGGTCTCCCCACGCGGCGGCGGCGCCGCCTGTTTACGTTTGCAGATTTCCAGGGGAG
CCCACCAACGCGACCAACATGGCCTCTGAAGACATTGCCAAGCTGGCAGAGACACTTGCC
AAAACCCAGGTGGCCGGGGGACAGCTGAGTTTCAAGGGCAAGAGCCTCAAACTCAATACT
GCGGAAGATGCCAAAGACGTGATCAAGGAGATTGAAGATTTTGACGGCTTAGAGGCCTTG
CGCCTGGAGGGCAACACGGTGGGCGTGGAAGCAGCCAGGGTCATCGCCAAGGCCTTGGAG
AAGAAGTCAGAGTTGAAGCGATGCCACTGGAGCGACATGTTCACGGGGAGGCTGCGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCATCATCCGCCGCGGTGCGCGGAACAGGTGGTGTTGAAGGTGCGAGCGGCGAGAACC
GCTGGGATTGCTGACGGACAGGTGGGCTGGGCATCGGGCCTCTGGACTGGAGGCAGCGAC
CCGGACCTGATCTGACCCGGACCCTAAATCAGTCCTCGCCCACCTGGGCGAACGCGCGCG
CTCCGGTCTCCCCACGCGGCGGCGGCGCCGCCTGTTTACGTTTGCAGATTTCCAGGGGAG
CCCACCAACGCGACCAACATGGCCTCTGAAGACATTGCCAAGCTGGCAGAGACACTTGCC
AAAACCCAGGTGGCCGGGGGACAGCTGAGTTTCAAGGGCAAGAGCCTCAAACTCAATACT
GCGGAAGATGCCAAAGACGTGATCAAGGAGATTGAAGATTTTGACGGCTTAGAGGCCTTG
CGCCTGGAGGGCAACACGGTGGGCGTGGAAGCAGCCAGGGTCATCGCCAAGGCCTTGGAG
AAGAAGTCAGAGTTGAAGCGATGCCACTGGAGCGACATGTTCACGGGGAGGCTGCGGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661974|ref|XP_515261.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661974|ref|XP_515261.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               253-370, - strand, RNAz p=0.978853

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               253-370, - strand, RNAz p=0.978853

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               220-370, gnl|bosTau2|chr5 (71127145-71126995)
               

               
               220-370, gnl|Hg17|chr22 (40001587-40001437)
               

               
               220-370, gnl|Mm7|chr15 (81809028-81808881)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-370, gnl|bosTau2|chr5 (71127145-71126995)
               

               
               220-370, gnl|Hg17|chr22 (40001587-40001437)
               

               
               220-370, gnl|Mm7|chr15 (81809028-81808881)

	220-370, gnl\|bosTau2\|chr5 (71127145-71126995)
	220-370, gnl\|Hg17\|chr22 (40001587-40001437)
	220-370, gnl\|Mm7\|chr15 (81809028-81808881)