Non-Coding RNA Search

Pig1-124C17

Sequence:


               
               AAACGAAGGGTACATTTTGGATCCTTACCGAGTTCTCTGTGTAGTGGCCCCCTCGGCACC
ATGAGGAGCTTCAAAGGAGTCAACTTTGGGACTTTGCTAAGCAGTCCAAAGGAGGCTGAA
GAGTTGCTGCTTGACTTGAAGGAGTTCCTGTCCAAGCTTCCAGTTGGTTCTCCCAGCTGT
CGGTCTGATGCGGAGAGGAGACAGACTTGTGATGCTGTCCTGAGGGCTTGCAACCAGCAG
CTGACTGTCAGGCTGGCTTGCCCTGAGCACCTAGGGAGCCTGCTGGAGCTGGCAGAGCTG
GCTTGCGATGGCTACTTGAGGTCTACCCCCCAGCGCCCACCCCTCTATCTGGAACGAATT
CTTTTCATCTTTCTGCGAAACGTTGCCGCACAGGGAATCCCAGAGGCCACACTCCGGCTT
GCTCAGCCCCTCCATGCCTGCATGGTGCAGTGCTCTCGCCAAGCTGCTCCTCAGGACTAT
GAAGCTGTGGCTCGGGGTAGCTTTTCTCTGCTTTGGAAGGGGGCAGAAGCCCTGGTGGAG
CCGCGAGCGGCGTTCTCAGCTCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACGAAGGGTACATTTTGGATCCTTACCGAGTTCTCTGTGTAGTGGCCCCCTCGGCACC
ATGAGGAGCTTCAAAGGAGTCAACTTTGGGACTTTGCTAAGCAGTCCAAAGGAGGCTGAA
GAGTTGCTGCTTGACTTGAAGGAGTTCCTGTCCAAGCTTCCAGTTGGTTCTCCCAGCTGT
CGGTCTGATGCGGAGAGGAGACAGACTTGTGATGCTGTCCTGAGGGCTTGCAACCAGCAG
CTGACTGTCAGGCTGGCTTGCCCTGAGCACCTAGGGAGCCTGCTGGAGCTGGCAGAGCTG
GCTTGCGATGGCTACTTGAGGTCTACCCCCCAGCGCCCACCCCTCTATCTGGAACGAATT
CTTTTCATCTTTCTGCGAAACGTTGCCGCACAGGGAATCCCAGAGGCCACACTCCGGCTT
GCTCAGCCCCTCCATGCCTGCATGGTGCAGTGCTCTCGCCAAGCTGCTCCTCAGGACTAT
GAAGCTGTGGCTCGGGGTAGCTTTTCTCTGCTTTGGAAGGGGGCAGAAGCCCTGGTGGAG
CCGCGAGCGGCGTTCTCAGCTCGGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               171-289, - strand, RNAz p=0.839141
               

               
               446-564, + strand, RNAz p=0.721604

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-289, - strand, RNAz p=0.839141
               

               
               446-564, + strand, RNAz p=0.721604

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               186-328, - strand, RNAmicro p=0.995044

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               186-328, - strand, RNAmicro p=0.995044

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of D79987, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of D79987, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               171-564, gnl|bosTau2|chr5 (19162916-19162523)
               

               
               171-564, gnl|Hg17|chr12 (51949104-51949497)
               

               
               171-564, gnl|Mm7|chr15 (102284370-102284763)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               171-564, gnl|bosTau2|chr5 (19162916-19162523)
               

               
               171-564, gnl|Hg17|chr12 (51949104-51949497)
               

               
               171-564, gnl|Mm7|chr15 (102284370-102284763)

	171-289, - strand, RNAz p=0.839141
	446-564, + strand, RNAz p=0.721604

	171-564, gnl\|bosTau2\|chr5 (19162916-19162523)
	171-564, gnl\|Hg17\|chr12 (51949104-51949497)
	171-564, gnl\|Mm7\|chr15 (102284370-102284763)