Non-Coding RNA Search

Pig1-124O10

Sequence:


               
               TCAGCTGGTTTCCAAGGAAGACTTCAAGTCCTCCACCTGTGCTGGGGAAGGGCTGTGGGG
CCGGGAGAGAGGAGGAGGACTTGAAGTCTCAGCTGGTTTCCAAGGAAGACTCCCAAAGGC
TGGTAGACCAGGAAGTTCAGGAGAAGCTGAGAGAGGCCCAGGAATGTAGCCGAATTCAGA
AGGAGCTGGAGAAAGAAAAGGCCAGCCTGACTCTGTTGCTGGTGGAAAAGGAACAGAGAC
TCCTTGGTTTACAAGAGGCCGACTCCATTCGACAACAAGAGCTGAGCTCCCTGCGCCAGG
ACATGCAGGAGGCCCAGGCAGGGCAGAAAGAGCTCAGCGCCCAGGTGGAATTACTGAAGC
AGGAGGTGAAGGCAAAGGAGACTGACTTTCTGGCCCAGGAAGCGCGGCTGCTGGAAGAGC
TGGAGGCATCTCAAGTAACAGAGCAGCAGCTACGAGCTTCCTTGTGGGCCCAGGAAGCCA
AGGCCGCACAACTACAGCTGCGACTGCGCAGCACAGAGAGCCAGCTGGAGGTGCTGCTGG
C

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCTGGTTTCCAAGGAAGACTTCAAGTCCTCCACCTGTGCTGGGGAAGGGCTGTGGGG
CCGGGAGAGAGGAGGAGGACTTGAAGTCTCAGCTGGTTTCCAAGGAAGACTCCCAAAGGC
TGGTAGACCAGGAAGTTCAGGAGAAGCTGAGAGAGGCCCAGGAATGTAGCCGAATTCAGA
AGGAGCTGGAGAAAGAAAAGGCCAGCCTGACTCTGTTGCTGGTGGAAAAGGAACAGAGAC
TCCTTGGTTTACAAGAGGCCGACTCCATTCGACAACAAGAGCTGAGCTCCCTGCGCCAGG
ACATGCAGGAGGCCCAGGCAGGGCAGAAAGAGCTCAGCGCCCAGGTGGAATTACTGAAGC
AGGAGGTGAAGGCAAAGGAGACTGACTTTCTGGCCCAGGAAGCGCGGCTGCTGGAAGAGC
TGGAGGCATCTCAAGTAACAGAGCAGCAGCTACGAGCTTCCTTGTGGGCCCAGGAAGCCA
AGGCCGCACAACTACAGCTGCGACTGCGCAGCACAGAGAGCCAGCTGGAGGTGCTGCTGG
C

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               204-346, - strand, RNAz p=0.974291
               

               
               257-346, + strand, RNAz p=0.628744

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-346, - strand, RNAz p=0.974291
               

               
               257-346, + strand, RNAz p=0.628744

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               204-346, gnl|bosTau2|chr13 (45715507-45715649)
               

               
               204-346, gnl|canFam2|chr24 (27417942-27418112)
               

               
               204-346, gnl|dasNov1|scaffold_15345 (1760-1933)
               

               
               204-346, gnl|echTel1|scaffold_165666 (3775-3949)
               

               
               204-346, gnl|galGal2|chr20 (1105693-1105509)
               

               
               204-346, gnl|hg17|chr20 (33547797-33547971)
               

               
               204-346, gnl|Hg17|chr20 (33547818-33547960)
               

               
               204-346, gnl|loxAfr1|scaffold_28290 (26170-26344)
               

               
               204-346, gnl|mm7|chr2 (155726072-155726240)
               

               
               204-346, gnl|Mm7|chr2 (155726090-155726232)
               

               
               204-346, gnl|monDom2|scaffold_6 (11485784-11485613)
               

               
               204-346, gnl|oryCun1|scaffold_215122 (49099-48924)
               

               
               204-346, gnl|panTro1|chr21 (35567672-35567846)
               

               
               204-346, gnl|rheMac2|chr10 (29044784-29044611)
               

               
               204-346, gnl|rn3|chr3 (146299271-146299439)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               204-346, gnl|bosTau2|chr13 (45715507-45715649)
               

               
               204-346, gnl|canFam2|chr24 (27417942-27418112)
               

               
               204-346, gnl|dasNov1|scaffold_15345 (1760-1933)
               

               
               204-346, gnl|echTel1|scaffold_165666 (3775-3949)
               

               
               204-346, gnl|galGal2|chr20 (1105693-1105509)
               

               
               204-346, gnl|hg17|chr20 (33547797-33547971)
               

               
               204-346, gnl|Hg17|chr20 (33547818-33547960)
               

               
               204-346, gnl|loxAfr1|scaffold_28290 (26170-26344)
               

               
               204-346, gnl|mm7|chr2 (155726072-155726240)
               

               
               204-346, gnl|Mm7|chr2 (155726090-155726232)
               

               
               204-346, gnl|monDom2|scaffold_6 (11485784-11485613)
               

               
               204-346, gnl|oryCun1|scaffold_215122 (49099-48924)
               

               
               204-346, gnl|panTro1|chr21 (35567672-35567846)
               

               
               204-346, gnl|rheMac2|chr10 (29044784-29044611)
               

               
               204-346, gnl|rn3|chr3 (146299271-146299439)

	204-346, - strand, RNAz p=0.974291
	257-346, + strand, RNAz p=0.628744

	204-346, gnl\|bosTau2\|chr13 (45715507-45715649)
	204-346, gnl\|canFam2\|chr24 (27417942-27418112)
	204-346, gnl\|dasNov1\|scaffold_15345 (1760-1933)
	204-346, gnl\|echTel1\|scaffold_165666 (3775-3949)
	204-346, gnl\|galGal2\|chr20 (1105693-1105509)
	204-346, gnl\|hg17\|chr20 (33547797-33547971)
	204-346, gnl\|Hg17\|chr20 (33547818-33547960)
	204-346, gnl\|loxAfr1\|scaffold_28290 (26170-26344)
	204-346, gnl\|mm7\|chr2 (155726072-155726240)
	204-346, gnl\|Mm7\|chr2 (155726090-155726232)
	204-346, gnl\|monDom2\|scaffold_6 (11485784-11485613)
	204-346, gnl\|oryCun1\|scaffold_215122 (49099-48924)
	204-346, gnl\|panTro1\|chr21 (35567672-35567846)
	204-346, gnl\|rheMac2\|chr10 (29044784-29044611)
	204-346, gnl\|rn3\|chr3 (146299271-146299439)