Non-Coding RNA Search

Pig1-125F01

Sequence:


               
               TCTGCCGCACAGTCGTTGCGGCTGCTGAGCTCTTCTCCTTCATTGTATCCGTGCTGCTAT
CCACCTTCTGCATCCACCGCTACCACAAGAACGCCCACAAGCCGCCCATTGCCTCGGCTG
AGATGACCTTCCGCCGGCCTGCCCAGGCCTTCCCGGTCAGCTACTCCTCATCTGGTGCCC
GCCGGCCCTCGCTGGACTCCATGGAGAACCCGGTCTCTGTGGACGCCTTCAAGATCCCAG
AGGATCCAAAGTGGGAATTCCCTCGGAAGAACTTGGTTCTTGGAAAAACCCTGGGAGAAG
GTGAATTTGGAAAAGTGGTCAAGGCGACAGCCTTCCGGCTGAAGGGAAAAGCACGGTACA
CAACTGTGGCCGTGAAGATGCTGAAAGAGAACGCCTCCCCAAGCGAGCTGCGGGACCTGC
TGTCAGAGTTCAACCTGCTAAAGCAGGTCAACCACCCGCAAGTCATCAAGCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGCCGCACAGTCGTTGCGGCTGCTGAGCTCTTCTCCTTCATTGTATCCGTGCTGCTAT
CCACCTTCTGCATCCACCGCTACCACAAGAACGCCCACAAGCCGCCCATTGCCTCGGCTG
AGATGACCTTCCGCCGGCCTGCCCAGGCCTTCCCGGTCAGCTACTCCTCATCTGGTGCCC
GCCGGCCCTCGCTGGACTCCATGGAGAACCCGGTCTCTGTGGACGCCTTCAAGATCCCAG
AGGATCCAAAGTGGGAATTCCCTCGGAAGAACTTGGTTCTTGGAAAAACCCTGGGAGAAG
GTGAATTTGGAAAAGTGGTCAAGGCGACAGCCTTCCGGCTGAAGGGAAAAGCACGGTACA
CAACTGTGGCCGTGAAGATGCTGAAAGAGAACGCCTCCCCAAGCGAGCTGCGGGACCTGC
TGTCAGAGTTCAACCTGCTAAAGCAGGTCAACCACCCGCAAGTCATCAAGCTGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-358, + strand, RNAz p=0.707205

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-358, + strand, RNAz p=0.707205

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-238, gnl|bosTau2|chr28 (8824533-8824296)
               

               
               1-238, gnl|canFam2|chr28 (6960200-6959912)
               

               
               1-238, gnl|dasNov1|scaffold_42982 (4073-3796)
               

               
               1-238, gnl|echTel1|scaffold_160248 (3412-3696)
               

               
               1-238, gnl|fr1|chrUn (195569148-195569418)
               

               
               1-238, gnl|galGal2|chr6 (4254810-4254543)
               

               
               1-238, gnl|hg17|chr10 (42929912-42930208)
               

               
               1-238, gnl|Hg17|chr10 (42929952-42930189)
               

               
               1-238, gnl|loxAfr1|scaffold_26937 (8245-8507)
               

               
               1-238, gnl|mm7|chr6 (118199149-118198860)
               

               
               1-238, gnl|Mm7|chr6 (118199111-118198877)
               

               
               1-238, gnl|monDom2|scaffold_14 (10216369-10216643)
               

               
               1-238, gnl|panTro1|chr8 (43562582-43562874)
               

               
               1-238, gnl|rheMac2|chr9 (43262670-43262966)
               

               
               1-238, gnl|rn3|chr4 (154712726-154712434)
               

               
               1-238, gnl|tetNig1|chr17 (887447-887713)
               

               
               1-238, gnl|xenTro1|scaffold_40 (2533648-2533372)
               


               
               240-387, gnl|bosTau2|chr28 (8821821-8821674)
               

               
               240-387, gnl|Hg17|chr10 (42932038-42932185)
               

               
               240-387, gnl|Mm7|chr6 (118195441-118195294)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-238, gnl|bosTau2|chr28 (8824533-8824296)
               

               
               1-238, gnl|canFam2|chr28 (6960200-6959912)
               

               
               1-238, gnl|dasNov1|scaffold_42982 (4073-3796)
               

               
               1-238, gnl|echTel1|scaffold_160248 (3412-3696)
               

               
               1-238, gnl|fr1|chrUn (195569148-195569418)
               

               
               1-238, gnl|galGal2|chr6 (4254810-4254543)
               

               
               1-238, gnl|hg17|chr10 (42929912-42930208)
               

               
               1-238, gnl|Hg17|chr10 (42929952-42930189)
               

               
               1-238, gnl|loxAfr1|scaffold_26937 (8245-8507)
               

               
               1-238, gnl|mm7|chr6 (118199149-118198860)
               

               
               1-238, gnl|Mm7|chr6 (118199111-118198877)
               

               
               1-238, gnl|monDom2|scaffold_14 (10216369-10216643)
               

               
               1-238, gnl|panTro1|chr8 (43562582-43562874)
               

               
               1-238, gnl|rheMac2|chr9 (43262670-43262966)
               

               
               1-238, gnl|rn3|chr4 (154712726-154712434)
               

               
               1-238, gnl|tetNig1|chr17 (887447-887713)
               

               
               1-238, gnl|xenTro1|scaffold_40 (2533648-2533372)
               


               
               240-387, gnl|bosTau2|chr28 (8821821-8821674)
               

               
               240-387, gnl|Hg17|chr10 (42932038-42932185)
               

               
               240-387, gnl|Mm7|chr6 (118195441-118195294)

	1-238, gnl\|bosTau2\|chr28 (8824533-8824296)
	1-238, gnl\|canFam2\|chr28 (6960200-6959912)
	1-238, gnl\|dasNov1\|scaffold_42982 (4073-3796)
	1-238, gnl\|echTel1\|scaffold_160248 (3412-3696)
	1-238, gnl\|fr1\|chrUn (195569148-195569418)
	1-238, gnl\|galGal2\|chr6 (4254810-4254543)
	1-238, gnl\|hg17\|chr10 (42929912-42930208)
	1-238, gnl\|Hg17\|chr10 (42929952-42930189)
	1-238, gnl\|loxAfr1\|scaffold_26937 (8245-8507)
	1-238, gnl\|mm7\|chr6 (118199149-118198860)
	1-238, gnl\|Mm7\|chr6 (118199111-118198877)
	1-238, gnl\|monDom2\|scaffold_14 (10216369-10216643)
	1-238, gnl\|panTro1\|chr8 (43562582-43562874)
	1-238, gnl\|rheMac2\|chr9 (43262670-43262966)
	1-238, gnl\|rn3\|chr4 (154712726-154712434)
	1-238, gnl\|tetNig1\|chr17 (887447-887713)
	1-238, gnl\|xenTro1\|scaffold_40 (2533648-2533372)

	240-387, gnl\|bosTau2\|chr28 (8821821-8821674)
	240-387, gnl\|Hg17\|chr10 (42932038-42932185)
	240-387, gnl\|Mm7\|chr6 (118195441-118195294)