Pig1-126J02
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTCTGGCATGATGCCCCCTCCAGGAATCCCCCCACCTTTTCCTCCAATGGGGCTCCCC CCCATGAGTCAGAGACCACCAGCCATCCCCCCCATGCCGCCTGGCATCATGCCCCCAATG CTTCCACCGATGGGGGCGCCACCACCACTCACACAGATACCAGGAATGGTACCTCCCATG ATGCCGGGAATGCTGATGCCAGCAGTGCCTGTCACTGCAGCGCTGCTGTGCCTGGGACTG GCCCTCCGCTCCTGCTGTCCCAGTGTCCCTGGAAAGAGTACAAGTCGGACACAGGCAAAC CTTACTACTATAACAACCAGAGTAAGGAGTCCCGCTGGACCCGGCCCAAGGACCTGGATG ACCTGGAGGCTCTAGTCAAACAGGAGGCTGCAGGGAAACAGCCGCAGCAGCCGCAGAGCC TACAGCCCCAGCCTCCTCAGCCGCAGCCCGACCCCCCGCCTGTGCCTCCTGGCTCCACCT TGGTGCCCACAGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTCTGGCATGATGCCCCCTCCAGGAATCCCCCCACCTTTTCCTCCAATGGGGCTCCCC CCCATGAGTCAGAGACCACCAGCCATCCCCCCCATGCCGCCTGGCATCATGCCCCCAATG CTTCCACCGATGGGGGCGCCACCACCACTCACACAGATACCAGGAATGGTACCTCCCATG ATGCCGGGAATGCTGATGCCAGCAGTGCCTGTCACTGCAGCGCTGCTGTGCCTGGGACTG GCCCTCCGCTCCTGCTGTCCCAGTGTCCCTGGAAAGAGTACAAGTCGGACACAGGCAAAC CTTACTACTATAACAACCAGAGTAAGGAGTCCCGCTGGACCCGGCCCAAGGACCTGGATG ACCTGGAGGCTCTAGTCAAACAGGAGGCTGCAGGGAAACAGCCGCAGCAGCCGCAGAGCC TACAGCCCCAGCCTCCTCAGCCGCAGCCCGACCCCCCGCCTGTGCCTCCTGGCTCCACCT TGGTGCCCACAGGCC |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 41-159, - strand, RNAz p=0.998197 | |
| 251-369, - strand, RNAz p=0.511539 | |
| 275-369, - strand, RNAz p=0.768518 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-159, - strand, RNAz p=0.998197 | |
| 251-369, - strand, RNAz p=0.511539 | |
| 275-369, - strand, RNAz p=0.768518 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 258-351, - strand, RNAmicro p=0.913853 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 12-159, gnl|bosTau2|chr5 (21763102-21762955) | |
| 12-159, gnl|Hg17|chr12 (48311450-48311597) | |
| 12-159, gnl|Mm7|chr15 (99289285-99289432) | |
| 248-369, gnl|bosTau2|chr5 (21761110-21760989) | |
| 248-369, gnl|canFam2|chr27 (8038157-8038010) | |
| 248-369, gnl|dasNov1|scaffold_70393 (2425-2586) | |
| 248-369, gnl|echTel1|scaffold_243160 (5010-4855) | |
| 248-369, gnl|fr1|chrUn (25939108-25939250) | |
| 248-369, gnl|galGal2|chr7 (36217699-36217549) | |
| 248-369, gnl|hg17|chr12 (48313467-48313618) | |
| 248-369, gnl|Hg17|chr12 (48313476-48313597) | |
| 248-369, gnl|loxAfr1|scaffold_9232 (39396-39533) | |
| 248-369, gnl|mm7|chr15 (99291186-99291345) | |
| 248-369, gnl|Mm7|chr15 (99291195-99291316) | |
| 248-369, gnl|oryCun1|scaffold_186962 (3580-3738) | |
| 248-369, gnl|panTro1|chr10 (49496879-49497030) | |
| 248-369, gnl|rheMac2|chr11 (46774481-46774632) | |
| 248-369, gnl|rn3|chr3 (34579353-34579223) | |
| 248-369, gnl|tetNig1|chr2 (12416924-12417048) | |
| 248-369, gnl|xenTro1|scaffold_133 (657936-658085) | |
| 388-495, gnl|bosTau2|chr5 (21760658-21760555) | |
| 388-495, gnl|Hg17|chr12 (48313930-48314039) | |
| 388-495, gnl|Mm7|chr15 (99291635-99291744) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-159, gnl|bosTau2|chr5 (21763102-21762955) | |
| 12-159, gnl|Hg17|chr12 (48311450-48311597) | |
| 12-159, gnl|Mm7|chr15 (99289285-99289432) | |
| 248-369, gnl|bosTau2|chr5 (21761110-21760989) | |
| 248-369, gnl|canFam2|chr27 (8038157-8038010) | |
| 248-369, gnl|dasNov1|scaffold_70393 (2425-2586) | |
| 248-369, gnl|echTel1|scaffold_243160 (5010-4855) | |
| 248-369, gnl|fr1|chrUn (25939108-25939250) | |
| 248-369, gnl|galGal2|chr7 (36217699-36217549) | |
| 248-369, gnl|hg17|chr12 (48313467-48313618) | |
| 248-369, gnl|Hg17|chr12 (48313476-48313597) | |
| 248-369, gnl|loxAfr1|scaffold_9232 (39396-39533) | |
| 248-369, gnl|mm7|chr15 (99291186-99291345) | |
| 248-369, gnl|Mm7|chr15 (99291195-99291316) | |
| 248-369, gnl|oryCun1|scaffold_186962 (3580-3738) | |
| 248-369, gnl|panTro1|chr10 (49496879-49497030) | |
| 248-369, gnl|rheMac2|chr11 (46774481-46774632) | |
| 248-369, gnl|rn3|chr3 (34579353-34579223) | |
| 248-369, gnl|tetNig1|chr2 (12416924-12417048) | |
| 248-369, gnl|xenTro1|scaffold_133 (657936-658085) | |
| 388-495, gnl|bosTau2|chr5 (21760658-21760555) | |
| 388-495, gnl|Hg17|chr12 (48313930-48314039) | |
| 388-495, gnl|Mm7|chr15 (99291635-99291744) |