Non-Coding RNA Search

Pig1-126K16

Sequence:


               
               CCTCCCAACCCCCCGGGGGGCCCGGACCGTCCTCTCCCAAACCTCTGCTGAGGCTGGACC
GCCGGACCAGATGTAGCCGGGCTCGGATCCGTCTCCTCCCCTTCTCTTTCTCTGTGGATC
TCTCCTGCCTGCCACCCACCGCCTGGACCGGGGCTGGTGAAGGGGCCTGCAGGCTCTGGA
GCCCTGATGCCTCACAGCTCACTTCCCTGAGAAGCCACCTCCAGCACCCAGAGTTGGGGA
CAGACCCTAGGGACGGACACGGGGCCGCAGGGAGCCCAGGGCGCCCCAATGCCAGGGCCT
ACCATGGCCCAAGCACTGCCCTGGCTCCTGCTATGGATGGGCTCCGGGGTGCTGCCTGCC
CACAGCCCCCAGCCTGGCATCCGGCTGCCCCTGCGAAGCGGCCTTGGGGGGGCACCCCTG
GGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCCAACCCCCCGGGGGGCCCGGACCGTCCTCTCCCAAACCTCTGCTGAGGCTGGACC
GCCGGACCAGATGTAGCCGGGCTCGGATCCGTCTCCTCCCCTTCTCTTTCTCTGTGGATC
TCTCCTGCCTGCCACCCACCGCCTGGACCGGGGCTGGTGAAGGGGCCTGCAGGCTCTGGA
GCCCTGATGCCTCACAGCTCACTTCCCTGAGAAGCCACCTCCAGCACCCAGAGTTGGGGA
CAGACCCTAGGGACGGACACGGGGCCGCAGGGAGCCCAGGGCGCCCCAATGCCAGGGCCT
ACCATGGCCCAAGCACTGCCCTGGCTCCTGCTATGGATGGGCTCCGGGGTGCTGCCTGCC
CACAGCCCCCAGCCTGGCATCCGGCTGCCCCTGCGAAGCGGCCTTGGGGGGGCACCCCTG
GGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-350, - strand, RNAz p=0.940624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-350, - strand, RNAz p=0.940624

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               247-343, - strand, RNAmicro p=0.994398

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               247-343, - strand, RNAmicro p=0.994398

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-424, gnl|bosTau2|chr15 (13586069-13585648)
               

               
               1-424, gnl|Hg17|chr11 (116692015-116691601)
               

               
               1-424, gnl|Mm7|chr9 (45796877-45797271)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-424, gnl|bosTau2|chr15 (13586069-13585648)
               

               
               1-424, gnl|Hg17|chr11 (116692015-116691601)
               

               
               1-424, gnl|Mm7|chr9 (45796877-45797271)

	1-424, gnl\|bosTau2\|chr15 (13586069-13585648)
	1-424, gnl\|Hg17\|chr11 (116692015-116691601)
	1-424, gnl\|Mm7\|chr9 (45796877-45797271)